SMTL ID : 5t0u.2 (1 other biounit)

CTCF ZnF2-7 and DNA complex structure

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

monomer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.8, L.10, C.11, H.24, H.28 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.8, A:C.11, A:H.24, A:H.28 ZN.2: 6 residues within 4Å: Chain A: C.36, D.38, C.39, M.41, H.52, H.57 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.36, A:C.39, A:H.52, A:H.57 ZN.3: 6 residues within 4Å: Chain A: C.65, M.67, C.68, Y.70, H.81, H.85 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.65, A:C.68, A:H.81, A:H.85 ZN.4: 6 residues within 4Å: Chain A: C.93, L.95, C.96, Y.98, H.109, H.113 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.93, A:C.96, A:H.109, A:H.113 ZN.5: 6 residues within 4Å: Chain A: C.121, I.123, C.124, H.137, I.138, H.142 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.121, A:C.124, A:H.137, A:H.142 ZN.6: 5 residues within 4Å: Chain A: C.151, H.153, C.154, H.167, H.172 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.151, A:C.154, A:H.167, A:H.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hashimoto, H. et al., Structural Basis for the Versatile and Methylation-Dependent Binding of CTCF to DNA. Mol. Cell (2017)

Release Date

2017-05-24

Peptides

Transcriptional repressor CTCF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Transcriptional repressor CTCF

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