SMTL ID : 5t1i.1

CBX3 chromo shadow domain in complex with histone H3 peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-2-1-mer

Ligands

12 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 3 residues within 4Å: Chain A: F.9, G.12, L.13 No protein-ligand interaction detected (PLIP) UNX.2: 1 residues within 4Å: Chain A: E.61 No protein-ligand interaction detected (PLIP) UNX.3: 5 residues within 4Å: Chain A: G.20, A.21 Chain C: Y.4, R.5 Ligands: UNX.12 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain B: C.52, P.53, Q.54 No protein-ligand interaction detected (PLIP) UNX.5: 4 residues within 4Å: Chain B: K.5, P.6, R.7, A.10 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain B: D.38, E.39, A.40 No protein-ligand interaction detected (PLIP) UNX.7: 1 residues within 4Å: Chain B: A.40 No protein-ligand interaction detected (PLIP) UNX.8: 3 residues within 4Å: Chain B: V.43, L.44, E.47 No protein-ligand interaction detected (PLIP) UNX.9: 3 residues within 4Å: Chain B: D.14, P.15, K.35 No protein-ligand interaction detected (PLIP) UNX.10: 5 residues within 4Å: Chain B: G.20, A.21 Chain C: R.12, I.14 Ligands: UNX.11 No protein-ligand interaction detected (PLIP) UNX.11: 4 residues within 4Å: Chain B: R.63 Chain C: L.11, R.12 Ligands: UNX.10 No protein-ligand interaction detected (PLIP) UNX.12: 5 residues within 4Å: Chain A: F.59, R.63 Chain C: R.5, G.7 Ligands: UNX.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Peptide recognition by heterochromatin protein 1 (HP1) chromoshadow domains revisited: Plasticity in the pseudosymmetric histone binding site of human HP1. J. Biol. Chem. (2017)

Release Date

2016-09-14

Peptides

Chromobox protein homolog 3: AB
Histone H3.1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Chromobox protein homolog 3

Histone H3.1

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