SMTL ID : 5t2s.3 (2 other biounits)

Structure of the FHA1 domain of Rad53 bound simultaneously to the BRCT domain of Dbf4 and a phosphopeptide.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-2-2-mer

Ligands

11 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: L.8, W.11, N.112 Chain C: T.141 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.112 Water bridges: A:R.108 GOL.2: 3 residues within 4Å: Chain A: R.137, I.147, D.149 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Water bridges: C:E.10, C:E.10 Hydrogen bonds: A:R.137, A:D.149 GOL.3: 6 residues within 4Å: Chain A: K.99, W.101, K.105 Chain C: N.214, G.215, E.231 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:E.231, A:K.105 Water bridges: A:V.100 GOL.4: 6 residues within 4Å: Chain A: N.214, G.215, E.231 Chain C: K.99, W.101, K.105 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:K.105, A:N.214, A:N.214 GOL.5: 5 residues within 4Å: Chain A: T.141 Chain C: M.3, L.8, W.11, N.112 3 PLIP interactions: 3 interactions with chain C Water bridges: C:N.112, C:N.112, C:N.112 GOL.6: 4 residues within 4Å: Chain C: Q.144, R.148, H.179, G.181 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.148, C:H.179 GOL.7: 5 residues within 4Å: Chain C: I.134, R.137, F.248, I.249, N.250 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:F.248 Water bridges: C:R.137, C:D.251 GOL.8: 4 residues within 4Å: Chain C: N.188, K.189 Chain D: T.5 Ligands: GOL.11 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.189 GOL.9: 4 residues within 4Å: Chain C: W.212, V.236, G.237 Chain D: D.8 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.8, D:D.8 GOL.10: 3 residues within 4Å: Chain C: I.147, R.148, D.149 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:D.149, C:D.149 GOL.11: 3 residues within 4Å: Chain C: N.188 Chain D: T.5 Ligands: GOL.8 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Almawi, A.W. et al., AND' logic gates at work: Crystal structure of Rad53 bound to Dbf4 and Cdc7. Sci Rep (2016)

Release Date

2016-10-12

Peptides

DDK kinase regulatory subunit DBF4,Serine/threonine-protein kinase RAD53: AC
ASP-GLY-GLU-SER-TPO-ASP-GLU-ASP-ASP: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

DDK kinase regulatory subunit DBF4,Serine/threonine-protein kinase RAD53

ASP-GLY-GLU-SER-TPO-ASP-GLU-ASP-ASP

Related Entries With Identical Sequence