SMTL ID : 5t3a.1

Maedi-Visna virus (MVV) integrase CCD-CTD (residues 60-275)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 5 residues within 4Å: Chain A: F.112, N.113, A.114, S.117 Chain B: Q.38 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.113, A:N.113, A:A.114, A:S.117, A:S.117, B:Q.38 ACT.2: 4 residues within 4Å: Chain A: H.10, Y.11, E.12, K.102 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.12 Salt bridges: A:K.102 ACT.3: 2 residues within 4Å: Chain A: Y.166, K.211 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.211 ACT.5: 5 residues within 4Å: Chain A: Q.38 Chain B: F.112, N.113, A.114, S.117 6 PLIP interactions: 1 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:Q.38, B:N.113, B:N.113, B:A.114, B:S.117, B:S.117 ACT.6: 4 residues within 4Å: Chain B: H.10, Y.11, E.12, K.102 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.12 Salt bridges: B:K.102 ACT.7: 2 residues within 4Å: Chain B: Y.166, K.211 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.211

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.4: 6 residues within 4Å: Chain A: L.108, I.124, T.125, K.129 Chain B: Y.75, L.76 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.129 MES.8: 6 residues within 4Å: Chain A: Y.75, L.76 Chain B: L.108, I.124, T.125, K.129 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.75 Salt bridges: B:K.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ballandras-Colas, A. et al., A supramolecular assembly mediates lentiviral DNA integration. Science (2017)

Release Date

2017-01-18

Peptides

integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

integrase