SMTL ID : 5t3i.1

cyan fluorescence protein soaked with selenourea for 5 min

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

13 x SEY: selenourea(Non-covalent)

SEY.1: 5 residues within 4Å: Chain A: N.24, G.126, I.127, D.128, F.129 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.126, A:D.128 Water bridges: A:G.25, A:F.129 SEY.2: 6 residues within 4Å: Chain A: F.98, K.100, K.165, L.177, D.179 Ligands: PO4.14 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.98, A:K.100 SEY.3: 5 residues within 4Å: Chain A: N.24, H.26, P.55, L.136, H.138 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.24, A:P.55 SEY.4: 4 residues within 4Å: Chain A: N.197, H.198, Y.199, G.227 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.197 SEY.5: 3 residues within 4Å: Chain A: D.101, D.102 Ligands: PO4.14 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.101, A:D.102, A:D.102 SEY.6: 8 residues within 4Å: Chain A: S.85, A.86, M.87, E.89, G.188, G.190, P.191, V.192 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.85, A:G.190 Water bridges: A:G.90 SEY.7: 5 residues within 4Å: Chain A: Y.142, N.143, Y.144, A.205, L.206 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.206 SEY.8: 4 residues within 4Å: Chain A: M.1, P.88, F.113, G.115 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:M.1, A:G.115, A:G.115 Water bridges: A:M.1 SEY.9: 2 residues within 4Å: Chain A: N.104, K.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.104 SEY.10: 2 residues within 4Å: Chain A: D.196, N.197 No protein-ligand interaction detected (PLIP) SEY.11: 5 residues within 4Å: Chain A: M.1, S.3, E.7, L.8, T.10 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.3, A:S.3, A:L.8, A:T.10 Water bridges: A:G.11 SEY.12: 5 residues within 4Å: Chain A: T.10, G.11, D.37, T.39, Y.40 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.10, A:D.37, A:T.39 Water bridges: A:D.37 SEY.13: 4 residues within 4Å: Chain A: D.20, G.21, K.27, F.28 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.21, A:G.21, A:F.28 Water bridges: A:F.28, A:S.29

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.14: 6 residues within 4Å: Chain A: F.98, F.99, K.100, D.101 Ligands: SEY.2, SEY.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.99, A:D.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Luo, Z., Selenourea: a convenient phasing vehicle for macromolecular X-ray crystal structures. Sci Rep (2016)

Release Date

2016-11-30

Peptides

Green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Green fluorescent protein

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