SMTL ID : 5t40.1

A Novel domain in human EXOG converts apoptotic endonuclease to DNA-repair enzyme

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.52, P.86, A.87, G.88, R.126, R.257 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:G.88 Water bridges: A:A.87, A:K.91, A:E.122, A:R.126, A:R.126, A:R.257 Salt bridges: A:R.52, A:R.257 SO4.2: 4 residues within 4Å: Chain A: F.57, S.80, R.81, F.111 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.81 Water bridges: A:R.81, A:R.81 Salt bridges: A:R.81 SO4.4: 6 residues within 4Å: Chain B: R.52, P.86, A.87, G.88, R.126, R.257 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:A.87, B:G.88 Water bridges: B:N.119, B:R.126, B:R.126, B:R.257 Salt bridges: B:R.257 SO4.5: 3 residues within 4Å: Chain B: S.80, R.81, F.111 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.81 Salt bridges: B:R.81

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 5 residues within 4Å: Chain A: G.82, H.83, N.114, W.118, E.122 No protein-ligand interaction detected (PLIP) MG.6: 5 residues within 4Å: Chain B: G.82, H.83, N.114, W.118, E.122 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Szymanski, M.R. et al., A domain in human EXOG converts apoptotic endonuclease to DNA-repair exonuclease. Nat Commun (2017)

Release Date

2017-05-17

Peptides

Nuclease EXOG, mitochondrial: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nuclease EXOG, mitochondrial

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