SMTL ID : 5t49.1

Crystal structure of SeMet derivative BhGH81

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 7 residues within 4Å: Chain A: N.461, D.462, A.525, D.526, F.531, N.536, W.611 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.461, A:D.462, A:D.526, A:N.536 EDO.2: 8 residues within 4Å: Chain A: D.151, Y.152, N.153, Y.156, V.157, T.171, V.265, R.266 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.151, A:N.153 Water bridges: A:T.171 EDO.3: 3 residues within 4Å: Chain A: H.116, H.125, H.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.116 EDO.4: 4 residues within 4Å: Chain A: Y.309, G.331, T.332, E.587 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.332, A:E.587 EDO.5: 5 residues within 4Å: Chain A: A.270, D.271, W.272, R.505, Y.512 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.271, A:W.272, A:W.272, A:R.505, A:R.505 EDO.6: 5 residues within 4Å: Chain A: D.271, W.272, T.273, T.282, T.284 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.284 EDO.7: 3 residues within 4Å: Chain A: R.362, M.402, D.775 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.362, A:D.775 EDO.8: 7 residues within 4Å: Chain A: Y.107, K.245, L.246, P.247, Q.325, Y.326, E.327 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.107, A:K.245, A:K.245, A:E.327 EDO.9: 5 residues within 4Å: Chain A: S.353, L.354, Q.706, H.709, W.710 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.354, A:Q.706

9 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.10: 5 residues within 4Å: Chain A: E.276, E.555, R.563, H.728, P.729 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.276, A:E.555 Water bridges: A:H.728 Salt bridges: A:R.563, A:H.728 PO4.11: 4 residues within 4Å: Chain A: H.637, P.638, D.639, Y.640 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.639, A:Y.640 Water bridges: A:V.584 Salt bridges: A:H.637 PO4.12: 7 residues within 4Å: Chain A: H.307, R.310, H.311, S.575, N.578, E.579, H.585 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.579 Water bridges: A:N.578, A:N.578, A:N.578, A:N.578 Salt bridges: A:H.311, A:H.585 PO4.13: 6 residues within 4Å: Chain A: D.197, W.199, S.209, H.213, H.215, K.249 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.197, A:D.197, A:D.197, A:S.209 Salt bridges: A:H.213, A:H.215, A:K.249 PO4.14: 6 residues within 4Å: Chain A: D.359, D.361, R.364, E.681, Y.708, H.712 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.361, A:Y.708, A:Y.708 Salt bridges: A:R.364, A:H.712 PO4.15: 3 residues within 4Å: Chain A: A.109, P.110, H.111 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.111 Salt bridges: A:H.111 PO4.16: 1 residues within 4Å: Chain A: E.120 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.120, A:E.120, A:E.120 PO4.17: 2 residues within 4Å: Chain A: H.166, D.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.185, A:D.185 Salt bridges: A:H.166 PO4.18: 5 residues within 4Å: Chain A: M.574, N.578, H.636, H.637, P.722 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.578 Water bridges: A:H.637 Salt bridges: A:H.636, A:H.637

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pluvinage, B. et al., Structural Analysis of a Family 81 Glycoside Hydrolase Implicates Its Recognition of beta-1,3-Glucan Quaternary Structure. Structure (2017)

Release Date

2017-06-28

Peptides

BH0236 protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BH0236 protein