SMTL ID : 5t4c.1

Crystal structure of BhGH81 mutant in complex with laminaro-hexaose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x BGC- BGC- BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-BGC-BGC.1: 24 residues within 4Å: Chain A: Y.381, K.385, H.452, R.457, N.459, D.460, F.463, H.464, A.523, D.524, F.529, N.534, Q.536, S.537, E.540, W.609, W.610, I.620, W.658, E.693, R.698 Ligands: BGC-BGC-BGC-BGC-BGC.2, BGC-BGC-BGC-BGC-BGC.2, PO4.24 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.693, A:R.698, A:R.698

1 x BGC- BGC- BGC- BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose-(1-3)-beta-D-glucopyranose

BGC-BGC-BGC-BGC-BGC.2: 14 residues within 4Å: Chain A: M.85, F.529, D.530, A.531, I.598, W.600, K.603, D.605, A.607, T.608, W.609, W.610, N.611 Ligands: BGC-BGC-BGC-BGC-BGC-BGC.1 No protein-ligand interaction detected (PLIP)

12 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 1 residues within 4Å: Chain A: H.202 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.202 EDO.4: 8 residues within 4Å: Chain A: D.149, N.151, Y.154, V.155, R.156, T.169, V.263, R.264 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.149, A:N.151 EDO.5: 6 residues within 4Å: Chain A: L.158, Q.165, A.167, E.180, Y.181, E.182 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.165 Water bridges: A:R.156, A:Q.165, A:Y.181, A:Y.181 EDO.6: 5 residues within 4Å: Chain A: R.64, V.65, T.66, D.149, Y.150 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.64, A:T.66 EDO.7: 5 residues within 4Å: Chain A: Q.70, Y.150, N.151, D.152, Y.510 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.70 Water bridges: A:Q.70, A:Y.150, A:N.151 EDO.8: 2 residues within 4Å: Chain A: R.97, E.99 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.97, A:E.99 EDO.9: 4 residues within 4Å: Chain A: E.115, N.116, R.117, E.118 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.115, A:R.117, A:E.118 EDO.10: 4 residues within 4Å: Chain A: D.195, V.196, W.197, K.247 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.196, A:K.247, A:K.247 EDO.11: 3 residues within 4Å: Chain A: E.198, M.199, N.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.199 Water bridges: A:M.199 EDO.12: 5 residues within 4Å: Chain A: A.268, D.269, W.270, R.503, Y.510 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.269, A:W.270, A:W.270, A:R.503, A:R.503 EDO.13: 5 residues within 4Å: Chain A: D.269, W.270, T.271, T.280, T.282 2 PLIP interactions: 2 interactions with chain A Water bridges: A:W.270, A:W.270 EDO.14: 3 residues within 4Å: Chain A: D.273, T.276, T.278 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.273, A:T.278 Water bridges: A:T.280

10 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.15: 6 residues within 4Å: Chain A: H.305, H.309, S.573, N.576, E.577, H.583 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.577 Water bridges: A:N.576, A:N.576, A:N.576, A:N.576, A:H.583 Salt bridges: A:H.309, A:H.583 PO4.16: 5 residues within 4Å: Chain A: E.274, E.553, R.561, H.726, P.727 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.274, A:E.553 Water bridges: A:E.553, A:R.561, A:R.561 Salt bridges: A:R.561, A:H.726 PO4.17: 6 residues within 4Å: Chain A: D.195, W.197, S.207, H.211, H.213, K.247 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.195, A:D.195, A:S.207 Salt bridges: A:H.211, A:H.213, A:K.247 PO4.18: 4 residues within 4Å: Chain A: H.635, P.636, D.637, Y.638 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.637, A:Y.638 Water bridges: A:R.641 Salt bridges: A:H.635 PO4.19: 2 residues within 4Å: Chain A: H.164, D.183 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.183, A:D.183 Salt bridges: A:H.164 PO4.20: 4 residues within 4Å: Chain A: M.572, N.576, H.634, P.720 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.576 Water bridges: A:N.576, A:H.634, A:H.635 Salt bridges: A:H.634, A:H.635 PO4.21: 6 residues within 4Å: Chain A: D.357, D.359, R.362, E.679, Y.706, H.710 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.359, A:Y.706, A:Y.706 Water bridges: A:R.362, A:R.362, A:E.679 Salt bridges: A:R.362, A:H.710 PO4.22: 3 residues within 4Å: Chain A: E.407, R.410, A.478 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.407, A:A.478 Salt bridges: A:R.410 PO4.23: 3 residues within 4Å: Chain A: A.107, P.108, H.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.109 Water bridges: A:H.109 Salt bridges: A:H.109 PO4.24: 3 residues within 4Å: Chain A: H.452 Ligands: BGC-BGC-BGC-BGC-BGC-BGC.1, BGC-BGC-BGC-BGC-BGC-BGC.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.452 Water bridges: A:Q.51, A:H.452 Salt bridges: A:H.452

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pluvinage, B. et al., Structural Analysis of a Family 81 Glycoside Hydrolase Implicates Its Recognition of beta-1,3-Glucan Quaternary Structure. Structure (2017)

Release Date

2017-06-28

Peptides

Glycoside Hydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycoside Hydrolase