SMTL ID : 5t4s.1 (2 other biounits)

Novel Approach of Fragment-Based Lead Discovery applied to Renin Inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.64 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: H.73, N.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.74

1 x PG6: 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE(Non-covalent)

PG6.2: 12 residues within 4Å: Chain A: Q.18, V.35, D.37, Y.82, T.84, P.117, F.118, L.120, F.123, V.126, G.227, F.252 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.84 Water bridges: A:T.84

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 8 residues within 4Å: Chain A: T.17, Q.18, Y.19, V.35, T.226, G.227, A.228, S.229 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.19 DMS.4: 6 residues within 4Å: Chain A: D.16, A.281, D.282, V.284, F.285, R.320 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.16, A:R.320 Salt bridges: A:D.16 pi-Cation interactions: A:F.285

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tawada, M. et al., Novel approach of fragment-based lead discovery applied to renin inhibitors. Bioorg.Med.Chem. (2016)

Release Date

2016-10-26

Peptides

Renin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Renin

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