SMTL ID : 5t50.1

LIGAND-FREE LECTIN FROM BAUHINIA FORFICATA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.43 Å

Oligo State

homo-dimer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.118, D.120, E.129, H.134 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.118, A:D.120, A:E.129, A:H.134, H2O.2, H2O.3 CA.2: 4 residues within 4Å: Chain A: D.120, W.122, N.124, E.129 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.120, A:W.122, A:E.129, H2O.3, H2O.3 CA.8: 4 residues within 4Å: Chain B: E.118, D.120, E.129, H.134 6 PLIP interactions: 4 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.118, B:D.120, B:E.129, B:H.134, H2O.10, H2O.10 CA.9: 4 residues within 4Å: Chain B: D.120, W.122, N.124, E.129 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.120, B:W.122, B:E.129, H2O.10, H2O.10

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: F.5, N.6, Y.7, D.15, Y.50 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.6, A:N.6, A:D.15, A:Y.50 EDO.4: 8 residues within 4Å: Chain A: S.60, F.61, Y.62, S.224, T.226 Chain B: N.185, V.187 Ligands: EDO.11 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Water bridges: B:N.185 Hydrogen bonds: A:S.224, A:T.226 EDO.5: 6 residues within 4Å: Chain A: Y.97, P.103, A.106, T.107, E.126, W.127 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.97, A:A.106 EDO.6: 4 residues within 4Å: Chain A: I.39, P.40, T.72, Y.213 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.72 Water bridges: A:Y.213 EDO.7: 7 residues within 4Å: Chain A: A.77, D.78, G.95, G.96, W.122, N.124, G.211 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.96, A:N.124, A:N.124 Water bridges: A:G.211 EDO.10: 6 residues within 4Å: Chain A: N.185 Chain B: S.60, F.61, Y.62, S.224, T.226 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.224 Water bridges: A:N.185 EDO.11: 8 residues within 4Å: Chain A: S.60, D.168, T.226 Chain B: R.146, T.148, Y.186, V.187 Ligands: EDO.4 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:S.60, A:D.168, B:R.146, B:V.187 EDO.12: 7 residues within 4Å: Chain B: A.77, D.78, G.95, G.96, W.122, N.124, G.211 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.96, B:N.124, B:N.124 Water bridges: B:T.210, B:G.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lubkowski, J. et al., Structural analysis and unique molecular recognition properties of a Bauhinia forficata lectin that inhibits cancer cell growth. FEBS J. (2017)

Release Date

2016-12-28

Peptides

Lectin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Lectin

Related Entries With Identical Sequence