SMTL ID : 5t5u.1

Crystal structure of Aspergillus fumigatus N-myristoyl transferase in complex with myristoyl CoA and a methylpyridyl-dipihenyl-pyridine ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 30 residues within 4Å: Chain A: H.65, Y.66, V.67, V.129, I.131, N.132, F.133, L.134, C.135, I.136, R.141, S.142, K.143, R.144, L.145, T.146, P.147, I.150, T.154, C.157, Y.158, I.162, Y.163, Q.164, A.165, Y.167, T.168, V.171, L.173, Y.381 34 PLIP interactions: 34 interactions with chain A Hydrophobic interactions: A:Y.66, A:V.67, A:V.129, A:I.131, A:L.134, A:L.134, A:I.136, A:I.150, A:I.150, A:Y.158, A:A.165, A:Y.167, A:Y.167, A:Y.167, A:Y.381, A:Y.381 Hydrogen bonds: A:F.133, A:L.134, A:L.134, A:I.136, A:R.141, A:S.142, A:R.144, A:L.145, A:T.146, A:T.146 Water bridges: A:S.142, A:K.143, A:K.143, A:R.144, A:R.144, A:R.144, A:V.171 Salt bridges: A:R.144

1 x 75T: 2-methyl-3-({[3'-(piperidin-4-yl)[1,1'-biphenyl]-4-yl]oxy}methyl)pyridine(Non-covalent)

75T.2: 15 residues within 4Å: Chain A: D.69, F.74, R.75, F.76, Y.182, H.184, F.197, Y.293, S.297, Y.312, N.353, A.354, L.355, M.410, L.411 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:D.69, A:F.74, A:F.74, A:F.76, A:Y.182, A:Y.182, A:F.197, A:N.353, A:L.355 Hydrogen bonds: A:Y.78, A:S.297, A:L.411 Water bridges: A:T.168 pi-Stacking: A:F.76, A:Y.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bayliss, T. et al., Design and Synthesis of Brain Penetrant Trypanocidal N-Myristoyltransferase Inhibitors. J. Med. Chem. (2017)

Release Date

2017-09-13

Peptides

Glycylpeptide N-tetradecanoyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase

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