SMTL ID : 5t61.1 (1 other biounit)

TUNGSTEN-CONTAINING FORMYLMETHANOFURAN DEHYDROGENASE FROM METHANOTHERMOBACTER WOLFEII, TRICLINIC FORM AT 2.55 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

hetero-4-4-4-4-4-4-mer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: K.178, H.231, H.271, D.385 Ligands: ZN.2, MFN.3 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.231, A:H.271 ZN.2: 8 residues within 4Å: Chain A: H.57, H.59, K.178, H.271, D.385, N.388 Ligands: ZN.1, MFN.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.57, A:H.59, A:D.385 ZN.29: 6 residues within 4Å: Chain G: K.178, H.231, H.271, D.385 Ligands: ZN.30, MFN.31 2 PLIP interactions: 2 interactions with chain G Metal complexes: G:H.231, G:H.271 ZN.30: 6 residues within 4Å: Chain G: H.57, H.59, K.178, H.271, D.385 Ligands: ZN.29 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:H.57, G:H.59, G:D.385 ZN.54: 6 residues within 4Å: Chain M: K.178, H.231, H.271, D.385 Ligands: ZN.55, MFN.56 2 PLIP interactions: 2 interactions with chain M Metal complexes: M:H.231, M:H.271 ZN.55: 8 residues within 4Å: Chain M: H.57, H.59, K.178, H.271, D.385, N.388 Ligands: ZN.54, MFN.56 3 PLIP interactions: 3 interactions with chain M Metal complexes: M:H.57, M:H.59, M:D.385 ZN.83: 6 residues within 4Å: Chain S: K.178, H.231, H.271, D.385 Ligands: ZN.84, MFN.85 2 PLIP interactions: 2 interactions with chain S Metal complexes: S:H.231, S:H.271 ZN.84: 7 residues within 4Å: Chain S: H.57, H.59, K.178, H.271, D.385, N.388 Ligands: ZN.83 3 PLIP interactions: 3 interactions with chain S Metal complexes: S:H.57, S:H.59, S:D.385

4 x MFN: N-[4,5,7-TRICARBOXYHEPTANOYL]-L-GAMMA-GLUTAMYL-N-{2-[4-({5-[(FORMYLAMINO)METHYL]-3-FURYL}METHOXY)PHENYL]ETHYL}-D-GLUTAMINE(Non-covalent)

MFN.3: 25 residues within 4Å: Chain A: H.231, L.235, H.271, F.274, W.282, R.283, T.316, T.318, M.323, E.324, L.327, L.330, F.351, Y.353, P.358, V.359, Q.363, D.385, N.388, H.417, K.418, W.419, R.422 Ligands: ZN.1, ZN.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.235, A:L.327, A:F.351, A:Y.353, A:P.358, A:V.359 Hydrogen bonds: A:D.385, A:W.419 Water bridges: A:H.59 Salt bridges: A:R.283, A:H.417, A:K.418, A:R.422, A:R.422 pi-Stacking: A:F.274, A:F.351 MFN.31: 23 residues within 4Å: Chain G: H.231, L.235, H.271, F.274, W.282, R.283, T.316, T.318, M.323, L.327, L.330, F.351, Y.353, P.358, V.359, Q.363, D.385, N.388, H.417, K.418, W.419, R.422 Ligands: ZN.29 14 PLIP interactions: 14 interactions with chain G Hydrophobic interactions: G:L.235, G:L.327, G:F.351, G:Y.353, G:P.358, G:V.359 Hydrogen bonds: G:T.318, G:T.318, G:W.419 Salt bridges: G:R.283, G:H.417, G:R.422 pi-Stacking: G:F.274, G:F.351 MFN.56: 23 residues within 4Å: Chain M: H.231, L.235, H.271, F.274, W.282, R.283, T.316, T.318, M.323, E.324, L.327, L.330, F.351, Y.353, V.359, Q.363, D.385, N.388, H.417, W.419, R.422 Ligands: ZN.54, ZN.55 11 PLIP interactions: 11 interactions with chain M Hydrophobic interactions: M:L.235, M:W.282, M:L.327, M:V.359 Hydrogen bonds: M:T.318, M:D.385 Salt bridges: M:R.283, M:H.417, M:R.422 pi-Stacking: M:F.274, M:F.351 MFN.85: 24 residues within 4Å: Chain S: H.231, L.235, G.236, H.271, F.274, W.282, R.283, T.316, T.318, M.323, E.324, L.327, L.330, F.351, Y.353, P.358, V.359, Q.363, D.385, N.388, H.417, W.419, R.422 Ligands: ZN.83 12 PLIP interactions: 12 interactions with chain S Hydrophobic interactions: S:L.235, S:L.327, S:P.358, S:V.359, S:V.359, S:W.419 Hydrogen bonds: S:T.318 Salt bridges: S:R.283, S:H.417, S:R.422 pi-Stacking: S:F.274, S:F.351

4 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain A: L.142, F.143, G.144, N.145, V.180 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.143, A:G.144, A:N.145, A:N.145, A:V.180, A:V.180 NA.32: 4 residues within 4Å: Chain G: L.142, N.145, V.180, T.344 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:G.144, G:N.145, G:N.145, G:V.180, G:V.180 NA.57: 4 residues within 4Å: Chain M: L.142, G.144, N.145, V.180 5 PLIP interactions: 5 interactions with chain M Hydrogen bonds: M:G.144, M:N.145, M:N.145, M:V.180, M:V.180 NA.86: 5 residues within 4Å: Chain S: L.142, F.143, G.144, N.145, V.180 6 PLIP interactions: 6 interactions with chain S Hydrogen bonds: S:F.143, S:G.144, S:N.145, S:N.145, S:V.180, S:V.180

25 x K: POTASSIUM ION(Non-covalent)

K.5: 4 residues within 4Å: Chain A: V.340, T.344 Chain B: E.138, R.142 Ligand excluded by PLIP K.11: 4 residues within 4Å: Chain B: S.40, K.41, V.43 Chain D: E.18 Ligand excluded by PLIP K.15: 3 residues within 4Å: Chain E: V.68, C.71, D.74 Ligand excluded by PLIP K.25: 4 residues within 4Å: Chain F: E.161, E.162, C.164, D.167 Ligand excluded by PLIP K.26: 4 residues within 4Å: Chain F: E.122, T.123, C.125, D.128 Ligand excluded by PLIP K.27: 4 residues within 4Å: Chain F: Q.246, E.247, C.249, D.252 Ligand excluded by PLIP K.28: 4 residues within 4Å: Chain F: V.195, H.196, C.213 Ligands: SF4.22 Ligand excluded by PLIP K.33: 4 residues within 4Å: Chain G: V.340, T.344 Chain H: E.138, R.142 Ligand excluded by PLIP K.42: 3 residues within 4Å: Chain K: V.68, C.71, D.74 Ligand excluded by PLIP K.51: 4 residues within 4Å: Chain L: E.161, E.162, C.164, D.167 Ligand excluded by PLIP K.52: 4 residues within 4Å: Chain L: Q.246, E.247, C.249, D.252 Ligand excluded by PLIP K.53: 3 residues within 4Å: Chain L: E.5, I.66, E.68 Ligand excluded by PLIP K.58: 4 residues within 4Å: Chain M: R.69, R.72, S.76 Chain N: G.305 Ligand excluded by PLIP K.59: 4 residues within 4Å: Chain M: V.340, T.344 Chain N: E.138, R.142 Ligand excluded by PLIP K.66: 4 residues within 4Å: Chain N: S.40, K.41, V.43 Chain P: E.18 Ligand excluded by PLIP K.70: 3 residues within 4Å: Chain Q: V.68, C.71, D.74 Ligand excluded by PLIP K.80: 4 residues within 4Å: Chain R: E.161, E.162, C.164, D.167 Ligand excluded by PLIP K.81: 4 residues within 4Å: Chain R: Q.246, E.247, C.249, D.252 Ligand excluded by PLIP K.82: 4 residues within 4Å: Chain R: K.201, R.202, C.204, D.207 Ligand excluded by PLIP K.87: 4 residues within 4Å: Chain S: R.69, R.72, S.76 Chain T: G.305 Ligand excluded by PLIP K.88: 5 residues within 4Å: Chain S: I.412, E.413, G.414, E.415, L.416 Ligand excluded by PLIP K.94: 4 residues within 4Å: Chain T: S.40, K.41, V.43 Chain V: E.18 Ligand excluded by PLIP K.106: 4 residues within 4Å: Chain X: E.122, T.123, C.125, D.128 Ligand excluded by PLIP K.107: 4 residues within 4Å: Chain X: E.161, E.162, C.164, D.167 Ligand excluded by PLIP K.108: 4 residues within 4Å: Chain X: Q.246, E.247, C.249, D.252 Ligand excluded by PLIP

46 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.6: 8 residues within 4Å: Chain B: C.9, C.12, T.14, L.15, C.16, C.35, G.38, R.159 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.9, B:C.12, B:C.16, B:C.35 SF4.13: 8 residues within 4Å: Chain E: C.12, H.13, C.15, G.16, C.18, V.53, C.71, A.75 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.12, E:C.15, E:C.18, E:C.71 SF4.14: 9 residues within 4Å: Chain E: L.5, C.22, I.45, C.61, G.62, K.63, C.64, G.65, C.67 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.22, E:C.61, E:C.64, E:C.67 SF4.16: 9 residues within 4Å: Chain F: L.264, C.281, V.285, C.308, I.309, Y.310, C.311, G.312, C.314 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.281, F:C.308, F:C.311, F:C.314 SF4.17: 8 residues within 4Å: Chain F: C.271, Q.272, A.273, C.274, E.275, T.276, C.277, C.318 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.271, F:C.274, F:C.277, F:C.318 SF4.18: 10 residues within 4Å: Chain F: C.41, P.42, V.43, I.46, C.71, V.72, L.73, C.74, G.75, C.77 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.41, F:C.71, F:C.74, F:C.77 SF4.19: 9 residues within 4Å: Chain F: C.31, A.32, V.33, C.34, G.35, C.37, C.81, F.83, L.86 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.31, F:C.34, F:C.37, F:C.81 SF4.20: 8 residues within 4Å: Chain F: C.125, I.130, C.239, V.240, N.241, C.242, G.243, C.245 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.125, F:C.239, F:C.242, F:C.245 SF4.21: 8 residues within 4Å: Chain F: C.115, I.116, Q.117, C.118, K.119, C.121, C.249, P.250 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.115, F:C.118, F:C.121, F:C.249 SF4.22: 6 residues within 4Å: Chain F: C.213, I.215, C.216 Chain L: C.213, C.216 Ligands: K.28 4 PLIP interactions: 2 interactions with chain L, 2 interactions with chain F, Metal complexes: L:C.213, L:C.216, F:C.213, F:C.216 SF4.23: 10 residues within 4Å: Chain F: C.154, I.155, Y.156, C.157, G.158, C.160, I.187, C.204, V.206, I.209 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.154, F:C.157, F:C.160, F:C.204 SF4.24: 10 residues within 4Å: Chain F: I.147, C.164, P.165, I.169, C.194, V.195, H.196, C.197, G.198, C.200 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.164, F:C.194, F:C.197, F:C.200 SF4.34: 8 residues within 4Å: Chain H: C.9, C.12, T.14, L.15, C.16, C.35, G.38, R.159 4 PLIP interactions: 4 interactions with chain H, Metal complexes: H:C.9, H:C.12, H:C.16, H:C.35 SF4.40: 8 residues within 4Å: Chain K: C.12, H.13, G.14, C.15, G.16, C.18, C.71, A.75 4 PLIP interactions: 4 interactions with chain K, Metal complexes: K:C.12, K:C.15, K:C.18, K:C.71 SF4.41: 9 residues within 4Å: Chain K: L.5, C.22, I.45, C.61, G.62, K.63, C.64, G.65, C.67 4 PLIP interactions: 4 interactions with chain K, Metal complexes: K:C.22, K:C.61, K:C.64, K:C.67 SF4.43: 10 residues within 4Å: Chain L: C.154, I.155, Y.156, C.157, G.158, C.160, I.187, C.204, P.205, I.209 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.154, L:C.157, L:C.160, L:C.204 SF4.44: 11 residues within 4Å: Chain L: I.147, C.164, P.165, A.168, I.169, C.194, V.195, H.196, C.197, G.198, C.200 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.164, L:C.194, L:C.197, L:C.200 SF4.45: 9 residues within 4Å: Chain L: C.281, P.282, V.285, C.308, I.309, Y.310, C.311, G.312, C.314 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.281, L:C.308, L:C.311, L:C.314 SF4.46: 9 residues within 4Å: Chain L: C.271, Q.272, A.273, C.274, E.275, T.276, C.277, L.301, C.318 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.271, L:C.274, L:C.277, L:C.318 SF4.47: 10 residues within 4Å: Chain L: L.24, C.41, P.42, C.71, V.72, L.73, C.74, G.75, M.76, C.77 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.41, L:C.71, L:C.74, L:C.77 SF4.48: 9 residues within 4Å: Chain L: C.31, A.32, V.33, C.34, G.35, C.37, C.81, F.83, L.86 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.31, L:C.34, L:C.37, L:C.81 SF4.49: 9 residues within 4Å: Chain L: C.125, A.129, I.130, C.239, V.240, N.241, C.242, G.243, C.245 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.125, L:C.239, L:C.242, L:C.245 SF4.50: 8 residues within 4Å: Chain L: C.115, I.116, Q.117, C.118, K.119, C.121, C.249, P.250 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.115, L:C.118, L:C.121, L:C.249 SF4.60: 7 residues within 4Å: Chain N: C.9, C.12, T.14, C.16, C.35, G.38, R.159 4 PLIP interactions: 4 interactions with chain N, Metal complexes: N:C.9, N:C.12, N:C.16, N:C.35 SF4.68: 9 residues within 4Å: Chain Q: C.12, H.13, C.15, G.16, C.18, V.53, C.71, A.75, I.76 4 PLIP interactions: 4 interactions with chain Q, Metal complexes: Q:C.12, Q:C.15, Q:C.18, Q:C.71 SF4.69: 9 residues within 4Å: Chain Q: L.5, C.22, I.45, C.61, G.62, K.63, C.64, G.65, C.67 4 PLIP interactions: 4 interactions with chain Q, Metal complexes: Q:C.22, Q:C.61, Q:C.64, Q:C.67 SF4.71: 8 residues within 4Å: Chain R: C.281, V.285, C.308, I.309, Y.310, C.311, G.312, C.314 4 PLIP interactions: 4 interactions with chain R, Metal complexes: R:C.281, R:C.308, R:C.311, R:C.314 SF4.72: 7 residues within 4Å: Chain R: C.271, Q.272, A.273, C.274, E.275, C.277, C.318 4 PLIP interactions: 4 interactions with chain R, Metal complexes: R:C.271, R:C.274, R:C.277, R:C.318 SF4.73: 9 residues within 4Å: Chain R: L.24, C.41, C.71, V.72, L.73, C.74, G.75, M.76, C.77 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.41, R:C.71, R:C.74, R:C.77 SF4.74: 10 residues within 4Å: Chain R: C.31, A.32, V.33, C.34, G.35, C.37, C.81, F.83, A.85, L.86 4 PLIP interactions: 4 interactions with chain R, Metal complexes: R:C.31, R:C.34, R:C.37, R:C.81 SF4.75: 9 residues within 4Å: Chain R: C.125, P.126, I.130, C.239, V.240, N.241, C.242, G.243, C.245 4 PLIP interactions: 4 interactions with chain R, Metal complexes: R:C.125, R:C.239, R:C.242, R:C.245 SF4.76: 9 residues within 4Å: Chain R: C.115, I.116, Q.117, C.118, K.119, A.120, C.121, C.249, V.251 4 PLIP interactions: 4 interactions with chain R, Metal complexes: R:C.115, R:C.118, R:C.121, R:C.249 SF4.77: 10 residues within 4Å: Chain R: C.154, I.155, Y.156, C.157, G.158, C.160, I.187, C.204, P.205, I.209 4 PLIP interactions: 4 interactions with chain R, Metal complexes: R:C.154, R:C.157, R:C.160, R:C.204 SF4.78: 9 residues within 4Å: Chain R: I.147, C.164, I.169, C.194, V.195, H.196, C.197, G.198, C.200 4 PLIP interactions: 4 interactions with chain R, Metal complexes: R:C.164, R:C.194, R:C.197, R:C.200 SF4.79: 5 residues within 4Å: Chain R: C.213, C.216 Chain X: C.213, I.215, C.216 4 PLIP interactions: 2 interactions with chain X, 2 interactions with chain R, Metal complexes: X:C.213, X:C.216, R:C.213, R:C.216 SF4.89: 7 residues within 4Å: Chain T: C.9, C.12, T.14, C.16, C.35, G.38, R.159 4 PLIP interactions: 4 interactions with chain T, Metal complexes: T:C.9, T:C.12, T:C.16, T:C.35 SF4.96: 8 residues within 4Å: Chain W: C.12, H.13, C.15, G.16, C.18, V.53, C.71, A.75 4 PLIP interactions: 4 interactions with chain W, Metal complexes: W:C.12, W:C.15, W:C.18, W:C.71 SF4.97: 10 residues within 4Å: Chain W: C.22, P.23, I.45, C.61, G.62, K.63, C.64, G.65, T.66, C.67 4 PLIP interactions: 4 interactions with chain W, Metal complexes: W:C.22, W:C.61, W:C.64, W:C.67 SF4.98: 9 residues within 4Å: Chain X: C.154, I.155, Y.156, C.157, G.158, C.160, I.187, C.204, I.209 4 PLIP interactions: 4 interactions with chain X, Metal complexes: X:C.154, X:C.157, X:C.160, X:C.204 SF4.99: 9 residues within 4Å: Chain X: I.147, C.164, I.169, C.194, V.195, H.196, C.197, G.198, C.200 4 PLIP interactions: 4 interactions with chain X, Metal complexes: X:C.164, X:C.194, X:C.197, X:C.200 SF4.100: 9 residues within 4Å: Chain X: C.281, V.285, C.308, I.309, Y.310, C.311, G.312, A.313, C.314 4 PLIP interactions: 4 interactions with chain X, Metal complexes: X:C.281, X:C.308, X:C.311, X:C.314 SF4.101: 11 residues within 4Å: Chain X: C.271, Q.272, A.273, C.274, E.275, T.276, C.277, L.301, C.318, V.320, A.322 4 PLIP interactions: 4 interactions with chain X, Metal complexes: X:C.271, X:C.274, X:C.277, X:C.318 SF4.102: 9 residues within 4Å: Chain X: C.41, P.42, A.45, C.71, V.72, L.73, C.74, G.75, C.77 4 PLIP interactions: 4 interactions with chain X, Metal complexes: X:C.41, X:C.71, X:C.74, X:C.77 SF4.103: 9 residues within 4Å: Chain X: C.31, A.32, V.33, C.34, G.35, C.37, C.81, F.83, L.86 4 PLIP interactions: 4 interactions with chain X, Metal complexes: X:C.31, X:C.34, X:C.37, X:C.81 SF4.104: 9 residues within 4Å: Chain X: C.125, I.130, C.239, V.240, N.241, C.242, G.243, W.244, C.245 4 PLIP interactions: 4 interactions with chain X, Metal complexes: X:C.125, X:C.239, X:C.242, X:C.245 SF4.105: 9 residues within 4Å: Chain X: C.115, I.116, Q.117, C.118, K.119, A.120, C.121, C.249, P.250 4 PLIP interactions: 4 interactions with chain X, Metal complexes: X:C.115, X:C.118, X:C.121, X:C.249

4 x W: TUNGSTEN ION(Non-covalent)

W.7: 5 residues within 4Å: Chain B: C.118 Chain D: R.9 Ligands: MGD.8, MGD.9, H2S.10 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.118 W.35: 5 residues within 4Å: Chain H: C.118 Chain J: R.9 Ligands: MGD.36, MGD.37, H2S.38 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:C.118 W.61: 5 residues within 4Å: Chain N: C.118 Chain P: R.9 Ligands: MGD.62, MGD.63, H2S.64 1 PLIP interactions: 1 interactions with chain N Metal complexes: N:C.118 W.90: 5 residues within 4Å: Chain T: C.118 Chain V: R.9 Ligands: MGD.91, MGD.92, H2S.93 1 PLIP interactions: 1 interactions with chain T Metal complexes: T:C.118

8 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)

MGD.8: 34 residues within 4Å: Chain B: K.41, C.91, T.114, V.117, C.118, M.254, H.258, H.290, I.341, A.342, S.343, D.344, H.348, I.365, E.366, P.367, H.368, T.370, P.382, A.383, I.384, V.385, D.414 Chain D: T.7, R.9, K.21, M.80, A.84, N.85, F.100, K.101 Ligands: W.7, MGD.9, H2S.10 21 PLIP interactions: 9 interactions with chain D, 12 interactions with chain B Hydrogen bonds: D:T.7, D:T.7, D:R.9, D:R.9, D:K.21, D:N.85, D:N.85, B:K.41, B:A.342, B:D.344, B:H.348, B:I.365, B:H.368, B:V.385 Salt bridges: D:K.21, B:H.290, B:H.290, B:H.348, B:H.348, B:D.414 pi-Stacking: D:F.100 MGD.9: 38 residues within 4Å: Chain B: F.11, I.37, C.118, W.149, G.150, C.151, N.152, H.155, A.156, H.157, V.184, D.185, P.186, R.187, T.189, F.203, D.204, D.206, G.253, M.254, G.255, I.256, S.259, G.289, H.290 Chain D: N.6, G.8, R.9, T.10, Q.13, G.14, I.17, M.80, K.101, N.102 Ligands: W.7, MGD.8, H2S.10 24 PLIP interactions: 15 interactions with chain B, 9 interactions with chain D Hydrogen bonds: B:N.152, B:N.152, B:H.155, B:A.156, B:V.184, B:R.187, B:R.187, B:D.204, B:M.254, B:S.259, D:N.6, D:R.9, D:R.9, D:Q.13, D:Q.13, D:N.102 Water bridges: B:D.206, B:D.206 Salt bridges: B:D.185, B:D.206, D:R.9, D:R.9, D:K.101 pi-Stacking: B:F.11 MGD.36: 35 residues within 4Å: Chain H: K.41, C.91, T.114, V.117, C.118, M.254, H.258, H.290, I.341, A.342, S.343, D.344, H.348, I.365, E.366, P.367, H.368, T.370, P.382, A.383, I.384, V.385, D.414 Chain J: T.7, G.8, R.9, E.18, K.21, M.80, N.85, F.100, K.101 Ligands: W.35, MGD.37, H2S.38 21 PLIP interactions: 12 interactions with chain H, 9 interactions with chain J Hydrogen bonds: H:K.41, H:H.258, H:A.342, H:D.344, H:H.348, H:I.365, H:V.385, J:T.7, J:T.7, J:R.9, J:R.9, J:K.21, J:N.85, J:N.85, J:K.101 Salt bridges: H:H.290, H:H.290, H:H.348, H:H.348, H:D.414, J:K.21 MGD.37: 40 residues within 4Å: Chain H: F.11, I.37, C.118, W.149, G.150, C.151, N.152, H.155, A.156, H.157, V.184, D.185, P.186, R.187, T.189, L.201, F.203, D.204, D.206, G.253, M.254, G.255, S.259, G.289, H.290 Chain J: N.6, T.7, G.8, R.9, T.10, Q.13, G.14, I.17, Y.77, M.80, K.101, N.102 Ligands: W.35, MGD.36, H2S.38 26 PLIP interactions: 15 interactions with chain H, 11 interactions with chain J Hydrogen bonds: H:N.152, H:H.155, H:A.156, H:V.184, H:R.187, H:R.187, H:D.204, H:M.254, H:G.255, H:S.259, J:N.6, J:R.9, J:R.9, J:Q.13, J:Q.13, J:Y.77, J:N.102 Water bridges: H:N.152, J:Y.77 Salt bridges: H:H.157, H:D.185, H:D.206, J:R.9, J:R.9, J:K.101 pi-Stacking: H:F.11 MGD.62: 35 residues within 4Å: Chain N: K.41, C.91, T.114, V.117, C.118, M.254, H.258, H.290, I.341, A.342, S.343, D.344, H.348, I.365, E.366, P.367, H.368, T.370, P.382, A.383, I.384, V.385, D.414 Chain P: T.7, G.8, R.9, I.17, K.21, M.80, N.85, F.100, K.101 Ligands: W.61, MGD.63, H2S.64 23 PLIP interactions: 14 interactions with chain N, 9 interactions with chain P Hydrogen bonds: N:K.41, N:H.258, N:A.342, N:D.344, N:H.348, N:I.365, N:V.385, P:T.7, P:T.7, P:R.9, P:R.9, P:K.21, P:N.85, P:N.85 Water bridges: N:Y.291, N:Y.291 Salt bridges: N:H.290, N:H.290, N:H.348, N:H.348, N:D.414, P:K.21 pi-Stacking: P:F.100 MGD.63: 38 residues within 4Å: Chain N: F.11, I.37, C.118, W.149, G.150, C.151, N.152, H.155, A.156, H.157, V.184, D.185, P.186, R.187, T.189, L.201, F.203, D.204, D.206, G.253, M.254, G.255, S.259, G.289, H.290 Chain P: N.6, G.8, R.9, T.10, Q.13, G.14, I.17, M.80, K.101, N.102 Ligands: W.61, MGD.62, H2S.64 23 PLIP interactions: 11 interactions with chain P, 12 interactions with chain N Hydrogen bonds: P:N.6, P:R.9, P:R.9, P:T.10, P:Q.13, P:Q.13, P:G.14, P:N.102, N:N.152, N:A.156, N:V.184, N:R.187, N:R.187, N:D.204, N:M.254, N:S.259 Salt bridges: P:R.9, P:R.9, P:K.101, N:D.185, N:D.206 Water bridges: N:D.206 pi-Stacking: N:F.11 MGD.91: 36 residues within 4Å: Chain T: K.41, C.91, T.114, V.117, C.118, M.254, H.258, H.290, I.341, A.342, S.343, D.344, H.348, I.365, E.366, P.367, H.368, T.370, P.382, A.383, I.384, V.385, D.414 Chain V: T.7, G.8, R.9, I.17, E.18, K.21, M.80, N.85, F.100, K.101 Ligands: W.90, MGD.92, H2S.93 24 PLIP interactions: 14 interactions with chain T, 10 interactions with chain V Hydrogen bonds: T:K.41, T:A.342, T:D.344, T:H.348, T:I.365, T:H.368, T:V.385, V:T.7, V:T.7, V:R.9, V:R.9, V:K.21, V:N.85, V:N.85, V:K.101 Water bridges: T:H.290, T:H.290 Salt bridges: T:H.290, T:H.290, T:H.348, T:H.348, T:D.414, V:K.21 pi-Stacking: V:F.100 MGD.92: 38 residues within 4Å: Chain T: F.11, C.12, I.37, C.118, W.149, G.150, C.151, N.152, H.155, A.156, H.157, V.184, D.185, P.186, R.187, T.189, F.203, D.204, D.206, G.253, M.254, G.255, S.259, G.289, H.290 Chain V: N.6, G.8, R.9, T.10, Q.13, G.14, I.17, M.80, K.101, N.102 Ligands: W.90, MGD.91, H2S.93 26 PLIP interactions: 17 interactions with chain T, 9 interactions with chain V Hydrogen bonds: T:N.152, T:N.152, T:H.155, T:A.156, T:V.184, T:R.187, T:R.187, T:D.204, T:M.254, T:G.255, T:S.259, V:N.6, V:R.9, V:R.9, V:Q.13, V:Q.13, V:N.102 Water bridges: T:D.206, T:H.290, T:H.290 Salt bridges: T:D.185, T:D.206, V:R.9, V:R.9, V:K.101 pi-Stacking: T:F.11

4 x H2S: HYDROSULFURIC ACID(Non-covalent)

H2S.10: 8 residues within 4Å: Chain B: T.114, C.118, G.289, H.290, V.293 Ligands: W.7, MGD.8, MGD.9 No protein-ligand interaction detected (PLIP) H2S.38: 7 residues within 4Å: Chain H: T.114, C.118, G.289, H.290 Ligands: W.35, MGD.36, MGD.37 No protein-ligand interaction detected (PLIP) H2S.64: 7 residues within 4Å: Chain N: T.114, C.118, G.289, H.290 Ligands: W.61, MGD.62, MGD.63 No protein-ligand interaction detected (PLIP) H2S.93: 8 residues within 4Å: Chain T: T.114, C.118, G.289, H.290, V.293 Ligands: W.90, MGD.91, MGD.92 No protein-ligand interaction detected (PLIP)

4 x MG: MAGNESIUM ION(Non-covalent)

MG.12: 7 residues within 4Å: Chain B: D.128 Chain C: S.139, Y.140, G.142, D.143, E.164, Y.165 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain C Metal complexes: B:D.128, C:S.139, C:Y.140, C:D.143 MG.39: 7 residues within 4Å: Chain H: D.128 Chain I: S.139, Y.140, G.142, D.143, E.164, Y.165 4 PLIP interactions: 3 interactions with chain I, 1 interactions with chain H Metal complexes: I:S.139, I:Y.140, I:D.143, H:D.128 MG.67: 7 residues within 4Å: Chain N: D.128 Chain O: S.139, Y.140, G.142, D.143, E.164, Y.165 3 PLIP interactions: 3 interactions with chain O Metal complexes: O:S.139, O:Y.140, O:D.143 MG.95: 7 residues within 4Å: Chain T: D.128 Chain U: S.139, Y.140, G.142, D.143, E.164, Y.165 4 PLIP interactions: 1 interactions with chain T, 3 interactions with chain U Metal complexes: T:D.128, U:S.139, U:Y.140, U:D.143

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.65: 2 residues within 4Å: Chain N: R.36 Chain Q: E.10 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wagner, T. et al., The methanogenic CO2 reducing-and-fixing enzyme is bifunctional and contains 46 [4Fe-4S] clusters. Science (2016)

Release Date

2016-10-19

Peptides

Tungsten formylmethanofuran dehydrogenase subunit fwdA: AGMS
Tungsten formylmethanofuran dehydrogenase subunit B: BHNT
Tungsten-containing formylmethanofuran dehydrogenase 2 subunit C: CIOU
Tungsten formylmethanofuran dehydrogenase subunit fwdD: DJPV
Tungsten formylmethanofuran dehydrogenase subunit fwdG: EKQW
Tungsten formylmethanofuran dehydrogenase subunit fwdF: FLRX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

G
G

M
M

S
S

B
B

H
H

N
N

T
T

C
C

I
I

O
O

U
U

D
D

J
J

P
P

V
V

E
E

K
K

Q
Q

W
W

F
F

L
L

R
R

X
X

Tungsten formylmethanofuran dehydrogenase subunit fwdA

Tungsten formylmethanofuran dehydrogenase subunit B

Tungsten-containing formylmethanofuran dehydrogenase 2 subunit C

Tungsten formylmethanofuran dehydrogenase subunit fwdD

Tungsten formylmethanofuran dehydrogenase subunit fwdG

Tungsten formylmethanofuran dehydrogenase subunit fwdF

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