SMTL ID : 5t6b.4 (3 other biounits)

X-ray structure of the KijD1 C3-methyltransfeerase, converted to monomeric form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.15, C.18, C.56, C.59 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.15, A:C.18, A:C.56, A:C.59

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 14 residues within 4Å: Chain A: F.92, I.114, G.115, N.117, F.135, E.136, P.137, F.156, F.157, A.178, N.179, T.180, H.183, I.184 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.115, A:N.117, A:N.117, A:S.138, A:F.157, A:A.178, A:T.180 Water bridges: A:R.70, A:F.157, A:A.178

1 x TMP: THYMIDINE-5'-PHOSPHATE(Non-covalent)

TMP.3: 13 residues within 4Å: Chain A: H.256, Y.325, A.327, T.328, K.330, D.350, T.351, T.352, K.355, N.387, H.388, I.392, K.395 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:H.388 Hydrogen bonds: A:H.256, A:T.351, A:K.355, A:N.387, A:K.395 Water bridges: A:H.256, A:Y.325, A:A.329, A:A.329, A:K.330, A:K.395 Salt bridges: A:K.330, A:H.388

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dow, G.T. et al., Structural studies on KijD1, a sugar C-3'-methyltransferase. Protein Sci. (2016)

Release Date

2016-09-14

Peptides

Sugar 3-C-methyl transferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Sugar 3-C-methyl transferase

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