SMTL ID : 5t6c.1

Crystal structure of Aspergillus fumigatus N-myristoyl transferase in complex with myristoyl CoA and a dichloro-methylpyridinyl-methoxy-phenyl-pyridine piperazine ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.1: 30 residues within 4Å: Chain A: H.65, Y.66, V.67, V.129, I.131, N.132, F.133, L.134, C.135, I.136, R.141, S.142, K.143, R.144, L.145, T.146, P.147, I.150, T.154, C.157, Y.158, I.162, Y.163, Q.164, A.165, Y.167, T.168, A.169, L.173, Y.381 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:Y.66, A:V.67, A:V.129, A:I.131, A:I.131, A:L.134, A:L.134, A:L.134, A:I.136, A:I.150, A:Y.158, A:A.165, A:Y.167, A:Y.167, A:Y.167, A:Y.381 Hydrogen bonds: A:Y.66, A:L.134, A:L.134, A:I.136, A:R.141, A:S.142, A:R.144, A:L.145, A:T.146, A:T.146 Water bridges: A:R.141, A:R.141, A:S.142, A:K.143, A:K.143 Salt bridges: A:R.144

1 x 75S: 1-(4-{3,5-dichloro-4-[(2-methylpyridin-3-yl)methoxy]phenyl}pyridin-2-yl)piperazine(Non-covalent)

75S.2: 19 residues within 4Å: Chain A: V.67, E.68, D.69, F.74, R.75, F.76, Y.78, T.168, A.169, G.170, Y.182, H.184, F.197, S.297, Y.312, G.374, Q.375, L.376, L.411 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.67, A:D.69, A:F.76, A:Y.182, A:F.197 Hydrogen bonds: A:Y.78, A:S.297 Water bridges: A:N.132, A:G.170, A:D.373 Halogen bonds: A:Y.312

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bayliss, T. et al., Design and Synthesis of Brain Penetrant Trypanocidal N-Myristoyltransferase Inhibitors. J. Med. Chem. (2017)

Release Date

2017-09-13

Peptides

Glycylpeptide N-tetradecanoyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glycylpeptide N-tetradecanoyltransferase

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