SMTL ID : 5t73.1

Crystal structure of S.aureus glyceraldehyde-3-phosphate-dehydrogenase (Gap) containing oxidized Cys151

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-tetramer

Ligands

8 x NA: SODIUM ION(Non-functional Binders)

NA.1: 7 residues within 4Å: Chain A: D.34, T.36, D.38, L.41, S.74, F.75, S.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.76 Water bridges: A:D.38 NA.2: 4 residues within 4Å: Chain A: I.21, Q.22, V.24, L.27 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.24, A:V.24 NA.3: 6 residues within 4Å: Chain B: D.34, T.36, D.38, L.41, F.75, S.76 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.34, B:F.75 Water bridges: B:F.75 NA.4: 4 residues within 4Å: Chain B: I.21, V.24, L.27, E.28 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.27, B:E.28 Water bridges: B:G.26 NA.5: 7 residues within 4Å: Chain C: D.34, T.36, D.38, L.41, S.74, F.75, S.76 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.34 NA.6: 5 residues within 4Å: Chain C: I.21, Q.22, V.24, L.27, E.28 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:V.24, C:E.28 Water bridges: C:G.26 NA.7: 7 residues within 4Å: Chain D: D.34, T.36, D.38, L.41, S.74, F.75, S.76 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:D.38 Water bridges: D:F.75 NA.8: 4 residues within 4Å: Chain D: I.21, Q.22, V.24, L.27 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:I.21, D:V.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Imber, M. et al., Protein S-Bacillithiolation Functions in Thiol Protection and Redox Regulation of the Glyceraldehyde-3-Phosphate Dehydrogenase Gap in Staphylococcus aureus Under Hypochlorite Stress. Antioxid. Redox Signal. (2018)

Release Date

2016-12-28

Peptides

Glyceraldehyde-3-phosphate dehydrogenase 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Glyceraldehyde-3-phosphate dehydrogenase 1

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