SMTL ID : 5t9p.1 (5 other biounits)

Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 1 residues within 4Å: Chain A: K.89 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.89 SO4.2: 5 residues within 4Å: Chain A: H.20, G.21, H.23, S.51, H.53 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.21, A:F.22 Water bridges: A:S.51, A:S.51 Salt bridges: A:H.20, A:H.23, A:H.53 SO4.3: 2 residues within 4Å: Chain A: H.23, R.44 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.44, A:G.49 Salt bridges: A:H.23, A:R.44 SO4.4: 4 residues within 4Å: Chain A: S.51, R.52, H.53, K.101 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.52, A:H.53, A:K.101 SO4.5: 4 residues within 4Å: Chain A: R.52, K.100, K.101, R.102 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.101, A:R.102 Water bridges: A:R.52, A:R.52, A:K.100 Salt bridges: A:R.52, A:R.102

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 1 residues within 4Å: Chain A: R.17 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: Q.83, R.85 Ligand excluded by PLIP CL.8: 1 residues within 4Å: Chain A: H.80 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: R.17, G.79, H.80 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Structural analysis reveals the flexible C-terminus of Nop15 undergoes rearrangement to recognize a pre-ribosomal RNA folding intermediate. Nucleic Acids Res. (2017)

Release Date

2016-11-16

Peptides

Ribosome biogenesis protein 15: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Ribosome biogenesis protein 15

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