SMTL ID : 5tc2.1

C-terminal domain of HIV-1 integrase, crystal structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.45, A.48, K.49, I.50 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.45, A:R.45, A:I.50, A:I.50 GOL.2: 5 residues within 4Å: Chain A: K.2, N.5, F.6, K.23, L.24 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.2, A:F.6, A:F.6, A:L.24 Water bridges: A:K.2, A:K.2 GOL.3: 4 residues within 4Å: Chain A: Q.4, R.52, K.56 Ligands: GOL.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.52, A:R.52, A:K.56 GOL.4: 5 residues within 4Å: Chain A: R.52, D.53, Y.54, K.56 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.52, A:G.55, A:K.56, A:K.56 GOL.5: 1 residues within 4Å: Chain B: R.46 No protein-ligand interaction detected (PLIP) GOL.6: 2 residues within 4Å: Chain B: P.44, R.46 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.46, B:R.46 GOL.7: 4 residues within 4Å: Chain A: D.39, I.40 Chain B: V.42, P.44 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tsirkone, V.G. et al., Interaction of TRN-SR2 with HIV Integrase. To Be Published

Release Date

2018-04-04

Peptides

integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

integrase