SMTL ID : 5tco.1

Human p38 MAP Kinase in Complex with Dibenzosuberone Compound 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 79Q: 3-[(3-benzamido-4-fluoranyl-phenyl)amino]-~{N}-(2-morpholin-4-ylethyl)-11-oxidanylidene-5,6-dihydrodibenzo[1,2-~{d}:1',2'-~{f}][7]annulene-9-carboxamide(Non-covalent)

79Q.1: 18 residues within 4Å: Chain A: V.30, A.51, K.53, E.71, L.74, L.75, I.84, L.104, T.106, L.108, M.109, G.110, A.111, D.112, L.167, D.168, F.169, L.171 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.51, A:K.53, A:E.71, A:L.74, A:L.75, A:T.106, A:L.108, A:L.167, A:L.171 Hydrogen bonds: A:K.53, A:E.71, A:M.109, A:G.110, A:D.168, A:D.168 pi-Stacking: A:F.169

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 13 residues within 4Å: Chain A: E.192, L.195, W.197, H.199, Y.200, L.232, L.236, L.246, K.249, L.291, D.292, S.293, D.294 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.197, A:L.232, A:L.236, A:L.246, A:L.246, A:L.291 Hydrogen bonds: A:H.199, A:D.292, A:S.293 Water bridges: A:N.201 BOG.3: 8 residues within 4Å: Chain A: L.195, N.196, W.197, K.249, I.250, S.251, A.255, I.259 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.255, A:I.259 Hydrogen bonds: A:L.195, A:K.249, A:S.251 Water bridges: A:N.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wentsch, H.K. et al., Optimized Target Residence Time: Type I1/2 Inhibitors for p38 alpha MAP Kinase with Improved Binding Kinetics through Direct Interaction with the R-Spine. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2017-04-19

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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