SMTL ID : 5td8.1

Crystal structure of an Extended Dwarf Ndc80 Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 7.53 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

6 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 3 residues within 4Å: Chain A: Y.172, L.194 Chain B: C.140 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:C.140, A:Y.172 HG.2: 3 residues within 4Å: Chain A: C.125, V.129 Chain B: S.64 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:S.64, B:S.64, A:C.125, A:C.125 HG.3: 5 residues within 4Å: Chain B: C.23, F.52, V.127, A.130, R.131 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.23 HG.4: 5 residues within 4Å: Chain B: Y.45, I.49, C.94, F.97, F.98 No protein-ligand interaction detected (PLIP) HG.5: 4 residues within 4Å: Chain D: F.71, C.77, R.122, L.125 No protein-ligand interaction detected (PLIP) HG.6: 2 residues within 4Å: Chain D: A.82, M.83 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:M.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Valverde, R. et al., Conserved Tetramer Junction in the Kinetochore Ndc80 Complex. Cell Rep (2016)

Release Date

2016-11-16

Peptides

Kinetochore protein NDC80: A
Kinetochore protein NUF2: B
Kinetochore protein SPC24: C
Kinetochore protein SPC25: D
nanobody: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

Kinetochore protein NDC80

Kinetochore protein NUF2

Kinetochore protein SPC24

Kinetochore protein SPC25

nanobody