SMTL ID : 5te0.1

Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in complex with BIBF 1120

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x XIN: methyl (3Z)-3-{[(4-{methyl[(4-methylpiperazin-1-yl)acetyl]amino}phenyl)amino](phenyl)methylidene}-2-oxo-2,3-dihydro-1H-indole-6-carboxylate(Non-covalent)

XIN.1: 24 residues within 4Å: Chain A: E.25, L.27, A.28, V.35, L.37, A.47, K.49, E.65, M.69, V.79, I.99, M.101, D.102, F.103, C.104, R.105, G.106, G.107, Q.108, N.111, L.158, C.168, D.169, F.170 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.27, A:L.27, A:A.28, A:V.35, A:V.79, A:F.103, A:Q.108, A:L.158 Hydrogen bonds: A:D.102, A:C.104, A:C.104, A:D.169 Water bridges: A:K.49 Salt bridges: A:E.25, A:E.25

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 10 residues within 4Å: Chain A: K.217, Y.267, D.274, K.275, R.276, P.277, D.278, Q.281, S.302, P.303 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.217, A:Q.281 Water bridges: A:Y.267, A:Y.267, A:P.273, A:D.274, A:K.275

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: L.117, Q.118, G.120, C.231, Y.232, F.233 Ligands: GOL.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.118, A:C.231 GOL.4: 4 residues within 4Å: Chain A: D.253, Q.259, H.262, K.313 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.253, A:Q.259, A:H.262 Water bridges: A:K.313 GOL.5: 7 residues within 4Å: Chain A: F.177, T.215, T.216, K.217, D.278, Q.300 Ligands: GOL.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.215, A:T.216 Water bridges: A:K.217 GOL.6: 5 residues within 4Å: Chain A: L.198, E.239, S.240, Q.241, V.242 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.239, A:S.240, A:S.240, A:Q.241, A:Q.241 GOL.7: 8 residues within 4Å: Chain A: C.231, Y.232, P.252, N.254, S.255, R.256, Y.257 Ligands: GOL.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.256 GOL.8: 7 residues within 4Å: Chain A: K.212, I.213, T.215, K.217, P.273, D.274 Ligands: GOL.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.213, A:T.215 Water bridges: A:D.274, A:D.274, A:D.274 GOL.9: 10 residues within 4Å: Chain A: S.73, H.75, K.76, I.78, V.79, G.80, D.102, H.160, H.164, V.166 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.74, A:I.78, A:G.80, A:H.164 GOL.10: 4 residues within 4Å: Chain A: K.193, L.198, R.201, E.239 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.193, A:R.201, A:R.201, A:E.239 Water bridges: A:L.198

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Counago, R.M. et al., Crystal Structure of Adaptor Protein 2 Associated Kinase (AAK1) in complex with BIBF 1120. To Be Published

Release Date

2016-11-02

Peptides

AP2-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AP2-associated protein kinase 1