SMTL ID : 5teg.1 (1 other biounit)

Crystal structure of hSETD8 in complex with histone H4K20 norleucine mutant peptide and S-Adenosylmethionine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x LYS- ARG- HIS- ARG- NLE- VAL- LEU- ARG: Histone H4 mutant peptide with H4K20norleucine(Non-covalent)

LYS-ARG-HIS-ARG-NLE-VAL-LEU-ARG.1: 26 residues within 4Å: Chain A: Y.53, K.64, E.67, Y.70, T.76, G.77, C.78, M.80, Y.81, Y.82, F.83, T.115, L.126, Y.142, D.143, Y.144, G.145, D.146, R.147, A.150, S.151, A.154, H.155, W.157, L.158 Ligands: SAM.2 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:Y.81, A:Y.81, A:Y.82, A:F.83, A:T.115, A:L.126, A:Y.144, A:Y.144, A:A.150, A:A.154, A:L.158 Hydrogen bonds: A:K.64, A:K.64, A:G.77, A:G.77, A:M.80, A:Y.82, A:Y.82, A:Y.144, A:D.146, A:R.147, A:S.151, A:H.155 Water bridges: A:Y.79, A:M.80, A:D.143, A:D.143, A:G.145, A:S.151 Salt bridges: A:E.67, A:D.143 pi-Stacking: A:H.155

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.2: 15 residues within 4Å: Chain A: G.33, K.34, G.35, R.36, C.78, Y.79, R.103, L.104, I.105, N.106, H.107, Y.144, W.157 Ligands: LYS-ARG-HIS-ARG-NLE-VAL-LEU-ARG.1, LYS-ARG-HIS-ARG-NLE-VAL-LEU-ARG.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.36, A:R.36, A:N.106, A:N.106, A:H.107, A:H.107 Water bridges: A:K.34, A:Y.79, A:H.155, A:W.157 Salt bridges: A:R.36 pi-Stacking: A:W.157, A:W.157, A:W.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Judge, R.A. et al., Turning a Substrate Peptide into a Potent Inhibitor for the Histone Methyltransferase SETD8. ACS Med Chem Lett (2016)

Release Date

2016-12-07

Peptides

N-lysine methyltransferase KMT5A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

N-lysine methyltransferase KMT5A

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