SMTL ID : 5tek.1

Apo Structure of 4-Hydroxy-tetrahydrodipicolinate Reductase from Mycobacterium tuberculosis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

homo-tetramer

Ligands

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: K.141, S.146, G.147, T.148 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain B: K.141, S.146, G.147, T.148 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain B: H.138, K.141 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain C: K.141, S.146, G.147, T.148 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain D: K.141, S.146, G.147, T.148 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain D: H.138, K.141 Ligand excluded by PLIP

4 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: V.25, A.26, A.28, L.31 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.25 NA.7: 4 residues within 4Å: Chain B: V.25, A.26, A.28, L.31 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.25 Water bridges: B:L.33 NA.9: 4 residues within 4Å: Chain C: V.25, A.26, A.28, L.31 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.26 NA.14: 4 residues within 4Å: Chain D: V.25, A.26, A.28, L.31 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.26 Water bridges: D:L.33

4 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.5: 9 residues within 4Å: Chain B: L.195, E.200, R.213 Chain C: E.200, L.202, T.211 Chain D: D.215 Ligands: PG4.6, PG4.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.213, B:R.213 PG4.6: 10 residues within 4Å: Chain A: D.215 Chain B: E.200 Chain C: L.136, L.195, H.198, E.200, R.213, D.215 Ligands: PG4.5, PG4.13 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.213, C:R.213 PG4.12: 9 residues within 4Å: Chain A: E.200, L.202, T.211 Chain B: D.215 Chain D: L.195, E.200, R.213 Ligands: PG4.5, PG4.13 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:R.213, D:R.213 PG4.13: 10 residues within 4Å: Chain A: L.136, L.195, H.198, E.200, R.213, D.215 Chain C: D.215 Chain D: E.200 Ligands: PG4.6, PG4.12 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.213, A:R.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pote, S. et al., Comparative structural and mechanistic studies of 4-hydroxy-tetrahydrodipicolinate reductases from Mycobacterium tuberculosis and Vibrio vulnificus. Biochim Biophys Acta Gen Subj (2021)

Release Date

2017-10-18

Peptides

4-hydroxy-tetrahydrodipicolinate reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

4-hydroxy-tetrahydrodipicolinate reductase