SMTL ID : 5tes.1

TEV Cleaved Human ATP Citrate Lyase Bound to Citrate and ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-oligomer

Ligands

1 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 15 residues within 4Å: Chain A: A.280, G.281, G.282, S.308, G.309, A.310, S.343, A.345, N.346, F.347, T.348, R.379 Chain B: G.178, G.179, H.274 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.347 Hydrogen bonds: A:G.309, A:A.310, A:N.346, A:N.346, A:F.347, A:T.348, A:T.348, A:T.348 Water bridges: A:G.282, B:G.179 Salt bridges: A:R.379

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: N.203, P.204, D.216 Ligands: ADP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:N.203, A:D.216, H2O.4, H2O.4 MG.4: 3 residues within 4Å: Chain A: G.282 Chain B: E.113, H.274 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 23 residues within 4Å: Chain A: E.8, V.56, K.58, K.64, R.65, R.66, G.67, K.68, V.72, V.74, E.108, P.109, F.110, V.111, H.113, E.118, G.139, V.140, N.203, P.204, L.215, D.216 Ligands: MG.2 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:R.66, A:G.67, A:P.109, A:V.111, A:E.118, A:E.118, A:V.140, A:D.216 Water bridges: A:K.58, A:R.65, A:R.65, A:Q.115, A:N.203, A:D.216 Salt bridges: A:K.58, A:R.66, A:R.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, J. et al., Binding of hydroxycitrate to human ATP-citrate lyase. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-08-09

Peptides

ATP-citrate synthase: A
ATP-citrate synthase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATP-citrate synthase

ATP-citrate synthase

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