SMTL ID : 5tey.1

Human METTL3-METTL14 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 20 residues within 4Å: Chain A: C.394, D.395, I.396, R.397, D.413, P.415, Y.424, G.425, L.427, S.529, H.530, K.531, E.550, F.552, R.554, H.556, N.557, G.566, N.567, Q.568 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:D.395, A:I.396, A:D.413, A:Y.424, A:K.531, A:F.552, A:N.557, A:N.567, A:N.567, A:Q.568 Water bridges: A:Y.536, A:Q.568 Salt bridges: A:H.530, A:R.554, A:H.556 pi-Stacking: A:F.552

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: E.524, E.534 Chain B: N.117 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.524, H2O.1, H2O.1, H2O.2, H2O.3

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: N.463, E.468, R.469 Chain B: D.242 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.463, A:R.469

8 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 2 residues within 4Å: Chain A: C.393, C.394 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: H.556, V.558, Q.559 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain B: P.194, E.196, Y.199, C.210 No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Chain B: D.222 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain B: V.328, R.354 No protein-ligand interaction detected (PLIP) UNX.10: 3 residues within 4Å: Chain A: E.456 Chain B: R.249, R.255 No protein-ligand interaction detected (PLIP) UNX.11: 2 residues within 4Å: Chain B: F.331, T.352 No protein-ligand interaction detected (PLIP) UNX.12: 5 residues within 4Å: Chain B: D.173, I.174, E.175, W.211, P.362 No protein-ligand interaction detected (PLIP)

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.6: 8 residues within 4Å: Chain A: G.491, H.492, W.493, L.494 Chain B: C.256, E.257, M.290, I.292 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.493, A:L.494

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

ZENG, H. et al., Human METTL3-METTL14 complex. to be published

Release Date

2016-11-23

Peptides

N6-adenosine-methyltransferase 70 kDa subunit: A
N6-adenosine-methyltransferase subunit METTL14: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

N6-adenosine-methyltransferase 70 kDa subunit

N6-adenosine-methyltransferase subunit METTL14