SMTL ID : 5tfk.1

Crystal Structure of Mouse Cadherin-23 EC19-21 WT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.6, N.8, D.42, D.44, Y.48, D.98 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.8, A:D.42, A:D.44, A:Y.48, A:D.98 CA.2: 5 residues within 4Å: Chain A: E.23, D.81, R.82, E.83, D.117 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.23, A:D.81, A:E.83, A:D.117, H2O.1 CA.3: 6 residues within 4Å: Chain A: E.23, E.83, D.114, D.115, D.117, D.150 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.23, A:E.83, A:D.114, A:D.115, A:D.150 CA.4: 3 residues within 4Å: Chain A: E.238, D.338, V.339 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.238 CA.5: 6 residues within 4Å: Chain A: N.116, N.118, D.148, D.150, N.154, D.201 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.118, A:D.148, A:D.150, A:N.154, A:D.201 CA.6: 5 residues within 4Å: Chain A: E.133, D.186, E.188, D.222 Ligands: CA.7 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.133, A:D.186, A:E.188, A:D.222, H2O.1 CA.7: 7 residues within 4Å: Chain A: E.133, E.188, D.219, I.220, D.222, D.255 Ligands: CA.6 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.133, A:D.219, A:I.220, A:D.222, A:D.255 CA.8: 5 residues within 4Å: Chain A: N.221, S.223, D.253, D.255, D.315 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.223, A:D.253, A:D.253, A:D.255, A:D.315

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jaiganesh, A. et al., Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness. Structure (2018)

Release Date

2017-12-27

Peptides

Cadherin-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cadherin-23