SMTL ID : 5tfm.1

Crystal Structure of Human Cadherin-23 EC6-8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.92 Å

Oligo State

monomer

Ligands

5 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.110, N.112, D.142, D.144, Y.149, D.195 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.112, A:D.142, A:D.144, A:Y.149, A:D.195 CA.2: 6 residues within 4Å: Chain A: E.17, E.75, D.108, E.109, D.111, D.144 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.75, A:D.108, A:E.109, A:D.111, A:D.144 CA.3: 5 residues within 4Å: Chain A: E.17, N.18, D.73, E.75, D.111 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.17, A:D.73, A:E.75, A:D.111, H2O.1 CA.5: 6 residues within 4Å: Chain A: E.127, E.182, D.215, I.216, D.218, D.251 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.127, A:D.215, A:I.216, A:D.218, A:D.251 CA.6: 6 residues within 4Å: Chain A: N.217, N.219, D.249, D.251, N.255, D.307 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.219, A:D.249, A:D.251, A:N.255, A:D.307

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: E.127, D.180, E.182, D.218 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.180, A:R.181

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jaiganesh, A. et al., Zooming in on Cadherin-23: Structural Diversity and Potential Mechanisms of Inherited Deafness. Structure (2018)

Release Date

2017-12-27

Peptides

Cadherin-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cadherin-23