SMTL ID : 5tgz.1

Crystal Structure of the Human Cannabinoid Receptor CB1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x ZDG: 4-[4-[2-(2,4-dichlorophenyl)-4-methyl-5-(piperidin-1-ylcarbamoyl)pyrazol-3-yl]phenyl]but-3-ynyl nitrate(Non-covalent)

ZDG.1: 20 residues within 4Å: Chain A: F.8, M.9, I.11, I.25, G.72, S.73, F.76, F.80, L.99, V.102, T.103, F.174, L.387, F.407, A.408, S.411, M.412, C.414, L.415, S.418 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.8, A:I.25, A:F.76, A:F.80, A:V.102, A:V.102, A:F.174, A:L.387, A:F.407 Hydrogen bonds: A:S.411, A:S.411 Halogen bonds: A:S.418

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 17 residues within 4Å: Chain A: S.221, T.222, T.223, G.224, N.225, T.226, S.269, T.270, W.271, G.272, C.304, G.305, D.306, W.309, Y.311, F.312, C.313 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:W.271, A:W.271, A:W.309, A:W.309 Hydrogen bonds: A:T.222, A:T.223, A:G.224, A:N.225, A:N.225, A:T.226, A:S.269, A:S.269, A:T.270, A:T.270, A:G.272, A:G.305, A:D.306, A:Y.311, A:C.313 pi-Stacking: A:W.309, A:W.309

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.3: 1 residues within 4Å: Chain A: R.132 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.126, A:R.132, A:R.132

3 x OLA: OLEIC ACID(Non-covalent)

OLA.4: 9 residues within 4Å: Chain A: P.57, S.58, F.61, I.62, L.115, A.116, D.119, F.143, L.369 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.61, A:F.61, A:I.62, A:A.116, A:F.143, A:L.369 OLA.5: 2 residues within 4Å: Chain A: F.114, F.195 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.114, A:F.114, A:F.195 OLA.6: 3 residues within 4Å: Chain A: L.115, M.146, L.192 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.115, A:M.146, A:L.192

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.7: 4 residues within 4Å: Chain A: D.262, Q.295, G.296, R.297 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hua, T. et al., Crystal Structure of the Human Cannabinoid Receptor CB1. Cell (2016)

Release Date

2016-11-02

Peptides

Cannabinoid receptor 1,Flavodoxin,Cannabinoid receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Cannabinoid receptor 1,Flavodoxin,Cannabinoid receptor 1