SMTL ID : 5tha.1

Gemin5 WD40 repeats in complex with a guanosyl moiety

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

21 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 4 residues within 4Å: Chain A: S.562, W.563, S.604, W.605 Ligand excluded by PLIP UNX.2: 2 residues within 4Å: Chain A: S.132 Ligands: UNX.3 Ligand excluded by PLIP UNX.3: 1 residues within 4Å: Ligands: UNX.2 Ligand excluded by PLIP UNX.4: 4 residues within 4Å: Chain A: N.32, W.33 Ligands: UNX.5, UNX.15 Ligand excluded by PLIP UNX.5: 5 residues within 4Å: Chain A: S.30, R.378 Ligands: UNX.4, UNX.6, UNX.15 Ligand excluded by PLIP UNX.6: 3 residues within 4Å: Chain A: W.33, R.378 Ligands: UNX.5 Ligand excluded by PLIP UNX.7: 4 residues within 4Å: Chain A: T.307, L.308, N.358, L.359 Ligand excluded by PLIP UNX.8: 2 residues within 4Å: Chain A: R.698, H.700 Ligand excluded by PLIP UNX.9: 2 residues within 4Å: Chain A: Q.317, Q.329 Ligand excluded by PLIP UNX.10: 3 residues within 4Å: Chain A: V.425, N.427, K.438 Ligand excluded by PLIP UNX.11: 4 residues within 4Å: Chain A: F.91, H.93, H.135, W.136 Ligand excluded by PLIP UNX.12: 4 residues within 4Å: Chain A: Y.402, S.403, L.705, C.706 Ligand excluded by PLIP UNX.13: 5 residues within 4Å: Chain A: Y.493, T.494, E.560, N.601 Ligands: GP3.22 Ligand excluded by PLIP UNX.14: 2 residues within 4Å: Chain A: K.285, R.338 Ligand excluded by PLIP UNX.15: 4 residues within 4Å: Chain A: N.32, R.52 Ligands: UNX.4, UNX.5 Ligand excluded by PLIP UNX.16: 2 residues within 4Å: Chain A: P.29, D.723 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain A: I.207, H.208, G.278 Ligand excluded by PLIP UNX.18: 3 residues within 4Å: Chain A: Y.34, E.302, R.303 Ligand excluded by PLIP UNX.19: 4 residues within 4Å: Chain A: S.403, L.404, L.451 Ligands: UNX.20 Ligand excluded by PLIP UNX.20: 4 residues within 4Å: Chain A: A.405, L.451, C.452 Ligands: UNX.19 Ligand excluded by PLIP UNX.21: 6 residues within 4Å: Chain A: I.411, G.412, S.413, N.427, T.428, L.429 Ligand excluded by PLIP

1 x GP3: DIGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GP3.22: 11 residues within 4Å: Chain A: Y.493, T.494, T.559, E.560, L.599, N.601, K.660, T.662, Y.679, L.705 Ligands: UNX.13 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:T.494, A:T.559, A:N.601, A:Y.679, A:Y.679, A:R.703 Water bridges: A:Y.679, A:L.705 pi-Stacking: A:Y.493, A:Y.493

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., Structural insights into Gemin5-guided selection of pre-snRNAs for snRNP assembly. Genes Dev. (2016)

Release Date

2016-10-19

Peptides

Gem-associated protein 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Gem-associated protein 5

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