SMTL ID : 5thf.1

Crystal structure of H3 hemagglutinin with insertion of two amino acids in the 150-loop from the A/Hong Kong/1/1968 (H3N2) influenza virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 7 residues within 4Å: Chain A: N.161, T.163, V.240 Chain C: S.215, R.216, P.217, W.218 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:V.240, C:P.217 Hydrogen bonds: C:W.218 NAG-NAG-BMA.3: 6 residues within 4Å: Chain C: N.161, T.163 Chain E: S.215, R.216, P.217, W.218 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:W.218 NAG-NAG-BMA.5: 5 residues within 4Å: Chain A: S.215, P.217, W.218 Chain E: N.161, T.163 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.218

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: N.281, V.293, N.294, K.295 Chain B: E.69 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:E.69 NAG-NAG.4: 5 residues within 4Å: Chain C: S.39, N.281, V.293, N.294 Chain D: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain E: S.39, N.281, V.293, N.294 Chain F: E.69 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain A: N.32, T.314 Chain B: L.52 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.32, A:T.314 NAG.8: 4 residues within 4Å: Chain A: Q.74, N.75, F.114, R.144 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.74 Hydrogen bonds: A:N.75 NAG.9: 2 residues within 4Å: Chain C: N.75, F.114 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.75 NAG.10: 3 residues within 4Å: Chain E: N.32, T.314 Chain F: L.52 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:N.32, E:T.314

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tzarum, N. et al., The 150-Loop Restricts the Host Specificity of Human H10N8 Influenza Virus. Cell Rep (2017)

Release Date

2017-04-05

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain