SMTL ID : 5thh.1

Crystal structure of a human tyrosyl-tRNA synthetase mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

2 x TYR: TYROSINE(Non-covalent)

TYR.1: 12 residues within 4Å: Chain A: Y.36, G.38, A.40, L.69, A.71, H.74, V.149, Y.163, Q.167, D.170, Q.179, Q.185 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:Y.36, A:L.69, A:A.71, A:Q.167 Hydrogen bonds: A:Y.163, A:Q.167, A:D.170, A:Q.185, A:Q.185 Water bridges: A:W.37, A:G.38, A:G.38, A:T.39, A:A.40 pi-Stacking: A:H.74 TYR.2: 12 residues within 4Å: Chain B: Y.36, G.38, A.40, L.69, A.71, H.74, V.149, Y.163, Q.167, D.170, Q.179, Q.185 16 PLIP interactions: 16 interactions with chain B, Hydrophobic interactions: B:Y.36, B:L.69, B:A.71, B:Q.167 Hydrogen bonds: B:Y.36, B:Q.167, B:D.170, B:D.170, B:Q.185, B:Q.185 Water bridges: B:W.37, B:G.38, B:G.38, B:T.39, B:A.40 pi-Stacking: B:H.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blocquel, D. et al., Alternative stable conformation capable of protein misinteraction links tRNA synthetase to peripheral neuropathy. Nucleic Acids Res. (2017)

Release Date

2017-05-17

Peptides

Tyrosine--tRNA ligase, cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Tyrosine--tRNA ligase, cytoplasmic