- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- monomer
- Ligands
- 1 x B3N: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide(Non-covalent)
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 6 residues within 4Å:- Chain A: K.132, V.133, L.292, Q.295, L.296, T.298
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.132, A:L.296
- Water bridges: A:L.296
EDO.6: 7 residues within 4Å:- Chain A: P.281, V.282, Y.317, L.346, E.347, I.348
- Ligands: EDO.10
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:I.348
EDO.7: 12 residues within 4Å:- Chain A: L.179, D.267, T.268, I.269, A.270, G.271, D.272, M.274, C.275, S.276, F.277, R.353
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.271, A:D.272, A:S.276, A:F.277, A:R.353, A:R.353
EDO.8: 4 residues within 4Å:- Chain A: N.307, L.308, A.309, A.339
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.308, A:A.309
EDO.9: 7 residues within 4Å:- Chain A: Y.317, G.320, V.321, K.325, T.326, L.327
- Ligands: EDO.10
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.317, A:L.327
EDO.10: 6 residues within 4Å:- Chain A: Y.317, L.327, L.346, E.347
- Ligands: EDO.6, EDO.9
No protein-ligand interaction detected (PLIP)EDO.11: 7 residues within 4Å:- Chain A: A.112, I.115, W.141, F.152, C.153, Y.154, L.155
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:F.152, A:Y.154, A:L.155, A:L.155
EDO.12: 8 residues within 4Å:- Chain A: V.214, D.216, V.217, S.226, V.227, N.228, I.369, N.372
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.216, A:N.228, A:I.369
EDO.13: 3 residues within 4Å:- Chain A: N.310, I.348, T.349
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.310, A:N.310, A:T.349, A:T.349, A:T.349
EDO.14: 5 residues within 4Å:- Chain A: H.78, E.95, Y.96, G.97, L.98
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.95, A:Y.96, A:L.98
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Porter, N.J. et al., Structural and Functional Influence of the Glycine-Rich Loop G302GGGY on the Catalytic Tyrosine of Histone Deacetylase 8. Biochemistry (2016)
- Release Date
- 2016-12-21
- Peptides
- Histone deacetylase 8: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.41 Å
- Oligo State
- monomer
- Ligands
- 1 x B3N: 4-(dimethylamino)-N-[7-(hydroxyamino)-7-oxoheptyl]benzamide(Non-covalent)
- 1 x ZN: ZINC ION(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Porter, N.J. et al., Structural and Functional Influence of the Glycine-Rich Loop G302GGGY on the Catalytic Tyrosine of Histone Deacetylase 8. Biochemistry (2016)
- Release Date
- 2016-12-21
- Peptides
- Histone deacetylase 8: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
C