SMTL ID : 5tj3.2 (1 other biounit)

Crystal structure of wild type alkaline phosphatase PafA to 1.7A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-tetramer

Ligands

16 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.27, T.68, D.294, D.341, H.342 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.27, A:D.27, A:D.341, A:H.342 ZN.2: 6 residues within 4Å: Chain A: Q.28, T.68, D.294, H.298, H.342, H.475 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.294, A:D.294, A:H.298, A:H.475, H2O.8 ZN.3: 4 residues within 4Å: Chain A: D.222, E.227, P.236, E.306 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.222, A:D.222, A:E.227, A:P.236, H2O.1 ZN.4: 3 residues within 4Å: Chain A: D.280, I.282, D.284 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.280, A:I.282, H2O.5, H2O.6, H2O.8 ZN.5: 5 residues within 4Å: Chain B: D.27, T.68, D.294, D.341, H.342 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.27, B:D.27, B:D.341, B:H.342 ZN.6: 6 residues within 4Å: Chain B: Q.28, T.68, D.294, H.298, H.342, H.475 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.294, B:D.294, B:H.298, B:H.475, H2O.31 ZN.7: 4 residues within 4Å: Chain B: D.222, E.227, P.236, E.306 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.222, B:D.222, B:E.227, B:P.236, H2O.25 ZN.8: 3 residues within 4Å: Chain B: D.280, I.282, D.284 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.280, B:I.282, H2O.28, H2O.30, H2O.32 ZN.9: 5 residues within 4Å: Chain C: D.27, T.68, D.294, D.341, H.342 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.27, C:D.27, C:D.341, C:H.342 ZN.10: 6 residues within 4Å: Chain C: Q.28, T.68, D.294, H.298, H.342, H.475 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.294, C:D.294, C:H.298, C:H.475, H2O.55 ZN.11: 4 residues within 4Å: Chain C: D.222, E.227, P.236, E.306 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.222, C:D.222, C:E.227, C:P.236, H2O.48 ZN.12: 3 residues within 4Å: Chain C: D.280, I.282, D.284 5 PLIP interactions: 2 interactions with chain C, 3 Ligand-Water interactions Metal complexes: C:D.280, C:I.282, H2O.52, H2O.53, H2O.55 ZN.13: 5 residues within 4Å: Chain D: D.27, T.68, D.294, D.341, H.342 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.27, D:D.27, D:D.341, D:H.342 ZN.14: 6 residues within 4Å: Chain D: Q.28, T.68, D.294, H.298, H.342, H.475 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.294, D:D.294, D:H.298, D:H.475, H2O.78 ZN.15: 4 residues within 4Å: Chain D: D.222, E.227, P.236, E.306 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.222, D:D.222, D:E.227, D:P.236, H2O.72 ZN.16: 3 residues within 4Å: Chain D: D.280, I.282, D.284 5 PLIP interactions: 2 interactions with chain D, 3 Ligand-Water interactions Metal complexes: D:D.280, D:I.282, H2O.75, H2O.77, H2O.79

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sunden, F. et al., Mechanistic and Evolutionary Insights from Comparative Enzymology of Phosphomonoesterases and Phosphodiesterases across the Alkaline Phosphatase Superfamily. J.Am.Chem.Soc. (2016)

Release Date

2016-11-16

Peptides

Alkaline phosphatase PafA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Alkaline phosphatase PafA

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