SMTL ID : 5tjh.1

hUGDH A136M Substitution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-hexamer

Ligands

5 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.1: 6 residues within 4Å: Chain A: F.272, G.273, F.277, F.338, K.339, R.442 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.273, A:G.273 Water bridges: A:R.442, A:R.442, A:R.442 Salt bridges: A:R.442 POP.2: 8 residues within 4Å: Chain B: F.265, G.271, F.272, G.273, F.277, F.338, K.339, R.442 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:G.271, B:G.273, B:G.273, B:F.338 Water bridges: B:R.442, B:R.442, B:R.442 Salt bridges: B:R.442 POP.5: 8 residues within 4Å: Chain D: I.231, G.271, F.272, G.273, F.277, F.338, K.339, R.442 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:S.269, D:G.271, D:G.273 Water bridges: D:R.442 Salt bridges: D:R.442 POP.7: 6 residues within 4Å: Chain E: I.231, F.272, G.273, F.277, F.338, K.339 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:G.273, E:F.338, E:R.442 Water bridges: E:R.442 Salt bridges: E:K.339 POP.8: 8 residues within 4Å: Chain F: I.231, G.271, F.272, G.273, F.277, F.338, K.339, R.442 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:G.273, F:G.273 Water bridges: F:S.269, F:R.442 Salt bridges: F:R.442

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain B: S.316 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain D: W.417, D.418, M.419 Ligand excluded by PLIP

1 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.4: 18 residues within 4Å: Chain C: F.162, L.163, K.220, N.224, I.231, F.265, L.266, K.267, S.269, G.271, F.272, G.273, C.276, F.277, F.338, K.339, R.442 Chain D: R.260 17 PLIP interactions: 15 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:I.231 Hydrogen bonds: C:K.220, C:K.220, C:N.224, C:K.267, C:K.267, C:S.269, C:G.273, C:F.338, C:R.442, C:R.442, D:R.260, D:R.260 Water bridges: C:K.220, C:E.416 Salt bridges: C:K.339, C:K.339

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Beattie, N.R. et al., Allostery and Hysteresis Are Coupled in Human UDP-Glucose Dehydrogenase. Biochemistry (2017)

Release Date

2016-11-02

Peptides

UDP-glucose 6-dehydrogenase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

UDP-glucose 6-dehydrogenase