SMTL ID : 5tmh.1 (1 other biounit)

Structure of Zika virus NS5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.28 Å

Oligo State

monomer

Ligands

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 16 residues within 4Å: Chain A: S.56, G.58, S.59, G.81, C.82, G.83, G.86, W.87, T.104, K.105, H.110, V.130, D.131, V.132, F.133, D.146 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.56, A:S.59, A:G.86, A:W.87, A:W.87, A:K.105, A:H.110, A:D.131, A:D.131, A:V.132, A:D.146

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: E.439, H.443, C.448, C.451 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.439, A:H.443, A:C.448, A:C.451 ZN.3: 4 residues within 4Å: Chain A: H.714, N.716, C.730, C.849 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.714, A:C.730, A:C.849

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: R.473, G.538, K.691 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.538 Salt bridges: A:K.359, A:R.473, A:K.691

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 2 residues within 4Å: Chain A: E.149, R.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.160 GOL.6: 1 residues within 4Å: Chain A: R.213 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, B. et al., The structure of Zika virus NS5 reveals a conserved domain conformation. Nat Commun (2017)

Release Date

2017-02-08

Peptides

Polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Polyprotein

Related Entries With Identical Sequence