SMTL ID : 5tnu.2 (1 other biounit)

S. tokodaii XPB II crystal structure at 3.0 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.05 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: T.112, G.113, A.114, G.115, K.116, T.117 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.113, A:A.114, A:G.115, A:K.116, A:T.117 Water bridges: A:Q.118 Salt bridges: A:K.116 SO4.2: 3 residues within 4Å: Chain A: K.84, K.86, D.153 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.84, A:K.86 SO4.3: 5 residues within 4Å: Chain A: G.160, G.161, G.162, E.163, S.176 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.160, A:G.162, A:S.176 Water bridges: A:D.164 SO4.4: 4 residues within 4Å: Chain A: Q.118, R.147, K.150, Y.151 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.118, A:Y.151 Salt bridges: A:R.147, A:K.150 SO4.5: 3 residues within 4Å: Chain A: L.82, I.83, K.128 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.83 Water bridges: A:I.83 Salt bridges: A:K.128

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 2 residues within 4Å: Chain A: S.201, R.225 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: S.201, E.202 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: L.78, L.166, E.183, K.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kahanda, D. et al., Application of Electrochemical Devices to Characterize the Dynamic Actions of Helicases on DNA. Anal.Chem. (2018)

Release Date

2017-11-01

Peptides

DNA-dependent ATPase XPBII: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DNA-dependent ATPase XPBII

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