SMTL ID : 5tog.2 (1 other biounit)

Room temperature structure of ubiquitin variant u7ub25.2540

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.08 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: T.24, E.26, N.27 Chain B: G.1 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:T.24, B:G.1 Water bridges: A:N.27, A:N.27 SO4.2: 5 residues within 4Å: Chain A: T.16, K.35 Chain B: T.16, K.35 Ligands: SO4.4 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Water bridges: B:T.16, B:T.16, B:T.16, A:T.16, A:T.16 Salt bridges: B:K.35, A:K.35 SO4.3: 4 residues within 4Å: Chain A: G.1 Chain B: T.24, E.26, N.27 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:T.24, A:G.1 Water bridges: B:N.27, B:N.27 SO4.4: 5 residues within 4Å: Chain A: T.16, K.35 Chain B: T.16, K.35 Ligands: SO4.2 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Water bridges: B:T.16, B:T.16, A:T.16, A:T.16, A:T.16 Salt bridges: B:K.35, A:K.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Biel, J.T. et al., Flexibility and Design: Conformational Heterogeneity along the Evolutionary Trajectory of a Redesigned Ubiquitin. Structure (2017)

Release Date

2017-05-24

Peptides

Polyubiquitin-B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Polyubiquitin-B

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