SMTL ID : 5toj.1

Crystal structure of the RSV F glycoprotein in complex with the neutralizing single-domain antibody F-VHH-4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: S.493, N.496, E.497, N.500 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.496 Hydrogen bonds: A:N.500 NAG.2: 4 residues within 4Å: Chain B: S.493, N.496, E.497, N.500 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.496 Hydrogen bonds: B:N.500 NAG.3: 4 residues within 4Å: Chain C: S.493, N.496, E.497, N.500 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:N.496 Hydrogen bonds: C:N.500

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rossey, I. et al., Potent single-domain antibodies that arrest respiratory syncytial virus fusion protein in its prefusion state. Nat Commun (2017)

Release Date

2017-02-22

Peptides

Fusion glycoprotein F0, Fibritin chimera: ABC
Single-domain antibody F-VHH-4: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Fusion glycoprotein F0, Fibritin chimera

Single-domain antibody F-VHH-4

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