SMTL ID : 5tps.1

Structure of a Fc heterodimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- GAL- MAN: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN.1: 12 residues within 4Å: Chain A: F.26, F.28, P.29, P.30, K.31, E.43, T.45, Q.80, N.82, T.84, R.86 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:F.28, A:K.31, A:K.31, A:E.43, A:E.43, A:T.45, A:T.45, A:K.31, A:R.86

1 x NAG- NAG- BMA- MAN- NAG- GAL- MAN- NAG- FUC: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-GAL-MAN-NAG-FUC.2: 18 residues within 4Å: Chain B: F.26, F.28, P.29, P.30, K.31, D.34, E.43, T.45, V.49, D.50, Q.80, Y.81, N.82, T.84, R.86, K.119 Ligands: NAG-NAG-BMA-MAN-NAG-GAL-MAN.1, NAG-NAG-BMA-MAN-NAG-GAL-MAN.1 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:F.28, B:K.31, B:K.31, B:D.34, B:E.43, B:E.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, H. et al., A new Fc heterodimer. To be published

Release Date

2017-10-25

Peptides

Ig gamma-1 chain C region: A
Ig gamma-1 chain C region: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Ig gamma-1 chain C region

Ig gamma-1 chain C region