SMTL ID : 5tqb.1

Crystal structure of assembly chaperone of ribosomal protein L4 (Acl4) in complex with ribosomal protein L4 (RpL4)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 13 residues within 4Å: Chain A: S.130, A.131, L.136, V.146, E.148, V.149, P.150, L.151, R.253, F.254, I.255, V.256, W.257 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.130, A:L.151, A:I.255, A:I.255 Water bridges: A:W.257 EDO.2: 10 residues within 4Å: Chain A: V.39, H.40, K.109, N.115, K.119 Chain B: P.227, F.228, P.229, R.231, E.257 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:H.40, A:K.109, A:N.115, B:F.228, B:R.231 EDO.4: 6 residues within 4Å: Chain A: R.204, G.248 Chain B: E.252, I.255, A.256, D.259 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.252 EDO.5: 6 residues within 4Å: Chain A: R.204 Chain B: D.259, L.260, W.265, Q.305, V.309 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.259, B:D.259, B:W.265, B:Q.305 EDO.6: 9 residues within 4Å: Chain B: E.147, W.184, P.185, E.186, P.226, P.227, S.230 Ligands: EDO.7, EDO.9 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.186, B:S.230, B:S.230 EDO.7: 10 residues within 4Å: Chain A: R.108, K.109, W.110, V.112 Chain B: R.144, E.147, W.184, P.227 Ligands: EDO.6, EDO.9 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.147 Water bridges: A:K.109 EDO.8: 10 residues within 4Å: Chain A: Y.51, A.52, G.69, T.104, I.106 Chain B: P.229, V.232, S.233, R.236, E.263 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:T.104, B:R.236, B:E.263 Water bridges: B:S.233 EDO.9: 11 residues within 4Å: Chain A: V.112 Chain B: R.144, E.147, W.184, P.223, G.224, V.225, P.226, P.227 Ligands: EDO.6, EDO.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.225

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 9 residues within 4Å: Chain A: W.110, H.111, V.112, K.113, I.114 Chain B: Q.50, E.86, D.140, R.144 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:V.112, A:K.113, B:Q.50, B:E.86, B:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huber, F.M. et al., Molecular basis for protection of ribosomal protein L4 from cellular degradation. Nat Commun (2017)

Release Date

2017-02-15

Peptides

60S ribosomal protein L4-like protein: A
Assembly chaperone of ribosomal protein L4 (Acl4): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

60S ribosomal protein L4-like protein

Assembly chaperone of ribosomal protein L4 (Acl4)