SMTL ID : 5trf.2 (7 other biounits)

MDM2 in complex with SAR405838

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x 7HC: (2'S,3R,4'S,5'R)-6-chloro-4'-(3-chloro-2-fluorophenyl)-2'-(2,2-dimethylpropyl)-N-(trans-4-hydroxycyclohexyl)-2-oxo-1,2-dihydrospiro[indole-3,3'-pyrrolidine]-5'-carboxamide(Non-covalent)

7HC.1: 16 residues within 4Å: Chain A: V.5, T.7, L.45, L.48, G.49, I.52, M.53, Y.58, H.64, F.77, F.82, V.84, H.87, I.90, Y.91 Ligands: GOL.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.5, A:V.5, A:T.7, A:L.45, A:L.45, A:L.48, A:Y.58, A:F.82, A:V.84, A:V.84 Hydrogen bonds: A:L.45 pi-Stacking: A:H.87 Halogen bonds: A:H.87

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: A.4, V.5, T.6, K.42 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.4, A:T.6 Water bridges: A:T.6 GOL.3: 4 residues within 4Å: Chain A: F.46, G.49, Q.50 Ligands: 7HC.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, S. et al., SAR405838: an optimized inhibitor of MDM2-p53 interaction that induces complete and durable tumor regression. Cancer Res. (2014)

Release Date

2016-11-09

Peptides

E3 ubiquitin-protein ligase Mdm2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

E3 ubiquitin-protein ligase Mdm2

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