SMTL ID : 5trq.2 (1 other biounit)

WELO5 SMALL MOLECULE HALOGENASE WITH NI(II) AND SUCCINATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

2 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: H.165, H.260 Ligands: SIN.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.165, A:H.260, H2O.1, H2O.5, H2O.7 NI.2: 1 residues within 4Å: Chain A: D.227 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.227, H2O.1, H2O.5, H2O.6

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.3: 8 residues within 4Å: Chain A: H.165, F.192, F.253, H.260, V.262, R.271, T.273 Ligands: NI.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.192, A:V.262 Salt bridges: A:H.165, A:H.260, A:R.271

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: R.45, Y.243, A.244, P.245, G.246 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.45, A:R.45, A:A.244, A:G.246 Water bridges: A:A.242 GOL.5: 4 residues within 4Å: Chain A: A.20, T.21, V.23, Q.124 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.20, A:Q.124 Water bridges: A:G.46

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 5 residues within 4Å: Chain A: A.12, L.13, E.210, R.257, Y.258 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.12, A:E.210 Water bridges: A:H.14 Salt bridges: A:R.257 ACT.7: 4 residues within 4Å: Chain A: E.126, H.130, P.136, V.137 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.130 Hydrogen bonds: A:V.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gallimore, E.O. et al., WELO5 SMALL MOLECULE HALOGENASE WITH NI(II) AND SUCCINATE. To be published

Release Date

2017-11-29

Peptides

WelO5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

WelO5

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