SMTL ID : 5trt.1

Crystal Structure of enoyl-(acyl carrier protein) reductase from Burkholderia pseudomallei 1710b bound to NAD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-tetramer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 1 residues within 4Å: Chain A: E.231 No protein-ligand interaction detected (PLIP) EDO.2: 5 residues within 4Å: Chain A: E.66, L.67, V.68, F.69, H.89 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.68, A:V.68 EDO.4: 4 residues within 4Å: Chain A: F.83, A.84, K.87, P.141 No protein-ligand interaction detected (PLIP) EDO.5: 4 residues within 4Å: Chain A: R.118 Chain B: A.74, D.75, D.76 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.75, B:D.76 Water bridges: B:A.77 EDO.7: 4 residues within 4Å: Chain B: Y.154, Y.164, F.211 Ligands: NAD.6 No protein-ligand interaction detected (PLIP) EDO.8: 4 residues within 4Å: Chain C: A.74, D.75, D.76 Chain D: R.118 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.75, C:D.75, C:D.76 EDO.10: 4 residues within 4Å: Chain C: R.118 Chain D: A.74, D.75, D.76 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:A.74, D:D.76 EDO.12: 5 residues within 4Å: Chain A: N.260, A.261 Chain C: R.179 Chain D: E.158, R.159 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain A Water bridges: C:R.179, C:R.179, A:R.159, A:R.159 Hydrogen bonds: A:N.260 EDO.13: 4 residues within 4Å: Chain A: E.158 Chain B: R.179 Chain D: N.260, A.261 5 PLIP interactions: 3 interactions with chain D, 2 interactions with chain B Hydrogen bonds: D:N.260, D:N.260 Water bridges: D:R.159, B:R.179, B:R.179

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 21 residues within 4Å: Chain A: G.21, L.23, S.27, I.28, V.48, C.71, D.72, V.73, S.99, I.100, G.101, I.127, L.152, S.153, Y.154, K.171, A.197, G.198, P.199, I.200, F.211 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.28, A:Y.154, A:A.197 Hydrogen bonds: A:G.21, A:I.28, A:D.72, A:V.73, A:I.100, A:I.100, A:G.101, A:K.171, A:I.200 Water bridges: A:G.21, A:G.21, A:S.27, A:A.29, A:S.99 NAD.6: 21 residues within 4Å: Chain B: G.21, L.23, S.27, I.28, V.48, C.71, D.72, V.73, S.99, I.100, G.101, I.127, L.152, S.153, Y.154, K.171, A.197, G.198, P.199, I.200 Ligands: EDO.7 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Y.154, B:A.197 Hydrogen bonds: B:G.21, B:I.28, B:D.72, B:V.73, B:I.100, B:G.101, B:K.171, B:I.200 Water bridges: B:G.21, B:G.21, B:S.27, B:A.29, B:I.100 NAD.9: 20 residues within 4Å: Chain C: G.21, L.23, S.27, I.28, V.48, C.71, D.72, V.73, S.99, I.100, G.101, I.127, L.152, S.153, Y.154, K.171, A.197, G.198, P.199, I.200 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:Y.154, C:A.197 Hydrogen bonds: C:G.21, C:S.27, C:I.28, C:D.72, C:D.72, C:V.73, C:I.100, C:G.101, C:K.171, C:I.200 Water bridges: C:L.23, C:A.29, C:S.99, C:I.100, C:Y.164 NAD.11: 20 residues within 4Å: Chain D: G.21, L.23, S.27, I.28, V.48, C.71, D.72, V.73, S.99, I.100, G.101, I.127, L.152, S.153, Y.154, K.171, A.197, G.198, P.199, I.200 16 PLIP interactions: 16 interactions with chain D Hydrophobic interactions: D:I.28, D:Y.154, D:A.197 Hydrogen bonds: D:G.21, D:I.28, D:D.72, D:D.72, D:V.73, D:I.100, D:G.101, D:K.171, D:I.200 Water bridges: D:G.21, D:S.27, D:I.100, D:G.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

SSGCID et al., Crystal Structure of enoyl-(acyl carrier protein) reductase from Burkholderia pseudomallei 1710b bound to NAD. To Be Published

Release Date

2016-11-16

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Enoyl-[acyl-carrier-protein] reductase [NADH]

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