Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 5ts2.2
(3 other biounits)
Crystal structure of a phosphopantetheine adenylyltransferase (CoaD, PPAT) from Pseudomonas aeruginosa bound to dephospho coenzyme A
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
homo-dimer
Ligands
2 x
COD
:
DEPHOSPHO COENZYME A
(Non-covalent)
COD.1:
23 residues within 4Å:
Chain A:
Y.14
,
P.15
,
G.16
,
T.17
,
F.18
,
G.24
,
H.25
,
A.44
,
F.77
,
T.79
,
L.80
,
L.81
,
R.95
,
G.96
,
R.98
,
Y.105
,
E.106
,
L.109
,
N.113
,
P.127
,
Y.131
,
S.132
,
I.134
23
PLIP interactions
:
23 interactions with chain A
Hydrophobic interactions:
A:P.15
Hydrogen bonds:
A:Y.14
,
A:T.17
,
A:T.17
,
A:F.18
,
A:L.81
,
A:R.95
,
A:G.96
,
A:R.98
,
A:Y.105
,
A:I.134
,
A:I.134
Water bridges:
A:T.22
,
A:H.25
,
A:A.82
,
A:R.95
,
A:S.136
,
A:S.136
,
A:S.136
Salt bridges:
A:H.25
,
A:R.95
pi-Cation interactions:
A:H.25
,
A:R.98
COD.4:
21 residues within 4Å:
Chain B:
Y.14
,
P.15
,
G.16
,
T.17
,
F.18
,
G.24
,
H.25
,
F.77
,
T.79
,
L.80
,
L.81
,
R.95
,
G.96
,
R.98
,
Y.105
,
E.106
,
L.109
,
N.113
,
P.127
,
Y.131
,
I.134
15
PLIP interactions
:
15 interactions with chain B
Hydrophobic interactions:
B:P.15
Hydrogen bonds:
B:T.17
,
B:F.18
,
B:L.81
,
B:G.96
,
B:G.96
,
B:Y.105
,
B:Y.105
,
B:Y.131
,
B:I.134
Water bridges:
B:D.19
,
B:A.82
Salt bridges:
B:H.25
,
B:R.95
pi-Cation interactions:
B:H.25
3 x
CL
:
CHLORIDE ION
(Non-functional Binders)
CL.2:
3 residues within 4Å:
Chain A:
S.135
,
S.136
,
T.137
Ligand excluded by PLIP
CL.3:
4 residues within 4Å:
Chain A:
K.86
,
A.117
,
P.118
,
D.119
Ligand excluded by PLIP
CL.6:
4 residues within 4Å:
Chain B:
A.117
,
P.118
,
D.119
,
V.120
Ligand excluded by PLIP
1 x
CA
:
CALCIUM ION
(Non-covalent)
CA.5:
1 residues within 4Å:
Chain B:
V.72
3
PLIP interactions
:
1 interactions with chain B
,
2 Ligand-Water interactions
Metal complexes:
B:V.72
,
H
2
O.2
,
H
2
O.2
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Edwards, T.E. et al., Crystal structure of a phosphopantetheine adenylyltransferase (CoaD, PPAT) from Pseudomonas aeruginosa bound to dephospho coenzyme A. To Be Published
Release Date
2016-11-09
Peptides
Phosphopantetheine adenylyltransferase:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
B
B
E
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
Phosphopantetheine adenylyltransferase
Related Entries With Identical Sequence
5ts2.1
|
5ts2.3
|
5ts2.4
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme