SMTL ID : 5ts8.1

Z. MAYS CK2 KINASE ALPHA SUBUNIT IN COMPLEX WITH THE ATP-COMPETITIVE INHIBITOR 5,6-DIBROMOBENZOTRIAZOLE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x 7M0: 5,6-DIBROMOBENZOTRIAZOLE(Non-covalent)

7M0.1: 8 residues within 4Å: Chain A: V.48, I.61, V.90, E.109, V.111, M.158, I.169 Ligands: TLA.8 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.61, A:I.169 Water bridges: A:D.170 Halogen bonds: A:V.111

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 6 residues within 4Å: Chain A: R.75, R.150, E.175, K.181, Y.183, N.184 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.75, A:E.175, A:K.181, A:N.184 Water bridges: A:Y.21, A:R.75, A:K.181, A:N.184, A:N.184 Salt bridges: A:K.71, A:R.75, A:R.150, A:K.181 TLA.8: 6 residues within 4Å: Chain A: V.40, Y.110, V.111, N.112, N.113 Ligands: 7M0.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.113, A:N.113 Water bridges: A:V.40

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 4 residues within 4Å: Chain A: V.90, K.91, E.109, R.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.91, A:E.109, A:R.167

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: R.273, P.275, W.276, T.277 Ligands: ACT.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.273, A:R.273, A:W.276

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 6 residues within 4Å: Chain A: R.273, P.275, W.276, T.277, I.293 Ligands: DMS.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.277 Hydrogen bonds: A:W.276 Water bridges: A:R.273 Salt bridges: A:R.273

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 2 residues within 4Å: Chain A: Y.84, G.85 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.84 EDO.10: 2 residues within 4Å: Chain A: H.290, I.293 No protein-ligand interaction detected (PLIP)

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.7: 1 residues within 4Å: Chain A: Q.81 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.9: 6 residues within 4Å: Chain A: D.125, R.129, Q.285, H.286, V.288, S.289 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.125, A:R.129 Water bridges: A:Y.126, A:S.289

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Winiewska, M. et al., STRUCTURAL AND THERMODYNAMIC ANALYSIS OF 5,6-DIBROMOBENZOTRIAZOLE BINDING TO CASEIN KINASE 2 ALPHA. To Be Published

Release Date

2018-01-17

Peptides

Protein kinase CK2 catalytic subunit CK2 alpha-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein kinase CK2 catalytic subunit CK2 alpha-3