SMTL ID : 5tth.1

Heterodimeric SpyCatcher/SpyTag-fused zebrafish TRAP1 in ATP/ADP-hybrid state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 21 residues within 4Å: Chain A: N.68, A.72, K.75, D.107, G.111, M.112, N.120, L.121, S.127, G.128, S.129, G.148, Q.149, F.150, G.151, V.152, G.153, F.154, T.200 Ligands: BEF.2, MG.3 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:N.68, A:K.75, A:D.107, A:S.127, A:G.128, A:S.129, A:S.129, A:Q.149, A:F.150, A:G.151, A:G.153, A:F.154, A:T.200 ADP.4: 21 residues within 4Å: Chain B: N.68, A.72, K.75, D.107, M.112, N.120, L.121, R.126, S.127, G.128, S.129, G.148, Q.149, F.150, G.151, V.152, G.153, F.154, T.200 Ligands: BEF.5, MG.6 12 PLIP interactions: 12 interactions with chain B Hydrogen bonds: B:K.75, B:D.107, B:N.120, B:S.127, B:G.128, B:S.129, B:S.129, B:Q.149, B:F.150, B:G.151, B:G.153, B:F.154

2 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 11 residues within 4Å: Chain A: E.64, N.68, G.148, Q.149, F.150, G.151, V.152, G.153, R.351 Ligands: ADP.1, MG.3 No protein-ligand interaction detected (PLIP) BEF.5: 10 residues within 4Å: Chain B: E.64, N.68, G.148, Q.149, F.150, G.151, V.152, G.153 Ligands: ADP.4, MG.6 No protein-ligand interaction detected (PLIP)

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: E.64, N.68 Ligands: ADP.1, BEF.2 No protein-ligand interaction detected (PLIP) MG.6: 4 residues within 4Å: Chain B: E.64, N.68 Ligands: ADP.4, BEF.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elnatan, D. et al., Symmetry broken and rebroken during the ATP hydrolysis cycle of the mitochondrial Hsp90 TRAP1. Elife (2017)

Release Date

2017-08-23

Peptides

C-terminal SpyCatcher fusion of wildtype zebrafish TNF receptor-associated protein 1: A
C-terminal Spytag fusion of R417A zebrafish TNF receptor-associated protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C-terminal SpyCatcher fusion of wildtype zebrafish TNF receptor-associated protein 1

C-terminal Spytag fusion of R417A zebrafish TNF receptor-associated protein 1