SMTL ID : 5tvl.1

Crystal structure of foldase protein PrsA from Streptococcus pneumoniae str. Canada MDR_19A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-tetramer

Ligands

7 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: N.33, M.77 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: L.187, G.191 Chain B: R.70 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain B: T.105, D.106 Ligand excluded by PLIP CL.6: 1 residues within 4Å: Chain B: R.82 Ligand excluded by PLIP CL.10: 1 residues within 4Å: Chain C: K.251 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain C: K.215 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain D: Y.64, N.67 Ligand excluded by PLIP

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.70 Chain B: L.187, D.188, G.191 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.188, B:D.188 Salt bridges: A:R.70 SO4.7: 6 residues within 4Å: Chain A: Y.204, S.205 Chain B: R.126, D.157, E.158, K.159 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.157, B:E.158, A:S.205 Salt bridges: B:R.126 SO4.8: 6 residues within 4Å: Chain A: K.182 Chain B: E.60, V.71, A.75, M.77, R.82 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:K.182, B:R.82

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: E.60, Y.64, A.75, R.82 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.60 GOL.9: 3 residues within 4Å: Chain B: T.13, H.15, Q.16 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.16 GOL.12: 2 residues within 4Å: Chain C: T.13, H.15 No protein-ligand interaction detected (PLIP) GOL.13: 2 residues within 4Å: Chain C: K.8, G.9 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.9 GOL.15: 3 residues within 4Å: Chain D: T.13, H.15, Q.16 No protein-ligand interaction detected (PLIP) GOL.16: 1 residues within 4Å: Chain D: A.102 No protein-ligand interaction detected (PLIP) GOL.17: 3 residues within 4Å: Chain D: E.103, F.244, I.248 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Center for Structural Genomics of Infectious Diseases (CSGID), Crystal structure of foldase protein PrsA from Streptococcus pneumoniae str. Canada MDR_19A. To Be Published

Release Date

2016-11-23

Peptides

Foldase protein PrsA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Foldase protein PrsA