SMTL ID : 5tvn.1

Crystal structure of the LSD-bound 5-HT2B receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

monomer

Ligands

1 x 7LD: (8alpha)-N,N-diethyl-6-methyl-9,10-didehydroergoline-8-carboxamide(Non-covalent)

7LD.1: 18 residues within 4Å: Chain A: W.91, L.92, D.95, V.96, S.99, T.100, L.169, F.177, G.181, S.182, A.185, W.339, F.342, F.343, N.346, L.364, E.365, V.368 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.91, A:L.92, A:V.96, A:L.169, A:F.177, A:F.342 Hydrogen bonds: A:G.181 Salt bridges: A:D.95 pi-Stacking: A:F.343

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 7 residues within 4Å: Chain A: I.21, I.25, I.26, G.30, T.33, Y.396, Y.401 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.21, A:I.25, A:I.26, A:I.26, A:T.33 Hydrogen bonds: A:Y.401, A:Y.401

1 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.3: 10 residues within 4Å: Chain A: S.110, M.193, T.196, Y.197, F.198, T.200, L.328, G.329, F.332, F.333 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.198, A:F.333 Hydrogen bonds: A:S.110, A:S.110, A:T.200, A:S.325

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 6 residues within 4Å: Chain A: Y.47, N.50, Y.382, F.385, N.386, F.389 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.47, A:N.386

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 7 residues within 4Å: Chain A: Q.249, P.254, K.255, D.268, R.270, H.271, D.274 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.249, A:K.255, A:D.274 Salt bridges: A:R.270

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wacker, D. et al., Crystal Structure of an LSD-Bound Human Serotonin Receptor. Cell (2017)

Release Date

2017-02-01

Peptides

Chimera protein of human 5-hydroxytryptamine receptor 2B and E. Coli soluble cytochrome b562: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Chimera protein of human 5-hydroxytryptamine receptor 2B and E. Coli soluble cytochrome b562