SMTL ID : 5tvo.1

Crystal structure of Trypanosoma brucei AdoMetDC-delta26 monomer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.48 Å

Oligo State

hetero-1-1-mer

Ligands

1 x PYR: PYRUVIC ACID(Covalent)

PYR.1: 10 residues within 4Å: Chain A: S.1, I.12, T.13, C.14, S.163, H.176 Chain B: F.2, Y.55, V.56, L.57 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:F.2 Hydrogen bonds: B:L.57, A:S.1 Water bridges: A:C.14

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 7 residues within 4Å: Chain A: V.237, E.238, P.239, A.247, R.250, V.264, Y.266 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.237

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Volkov, O.A. et al., Relief of autoinhibition by conformational switch explains enzyme activation by a catalytically dead paralog. Elife (2016)

Release Date

2016-12-28

Peptides

S-adenosylmethionine decarboxylase proenzyme: A
S-adenosylmethionine decarboxylase proenzyme: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

S-adenosylmethionine decarboxylase proenzyme

S-adenosylmethionine decarboxylase proenzyme