SMTL ID : 5tvs.1 (1 other biounit)

JMJD2A in complex with Ni(II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.75 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 3 residues within 4Å: Chain A: H.188, E.190, H.276 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.188, A:E.190, A:H.276

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: C.234, A.236, F.237, H.240, C.306, C.308 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.234, A:H.240, A:C.308

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cascella, B. et al., The small molecule JIB-04 disrupts O2 binding in the Fe-dependent histone demethylase KDM4A/JMJD2A. Chem. Commun. (Camb.) (2017)

Release Date

2017-02-01

Peptides

Lysine-specific demethylase 4A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 4A

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