SMTL ID : 5tvw.1

Crystal structure of mitochondrial Hsp90 (TRAP1) with ATP in absence of Mg, hemi-hydrolyzed

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: N.68, A.72, K.75, D.107, M.112, N.120, S.127, G.128, S.129, G.148, Q.149, F.150, G.151, V.152, G.153, F.154, T.200 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:N.68, A:K.75, A:D.107, A:S.127, A:G.128, A:S.129, A:S.129, A:Q.149, A:F.150, A:G.151, A:V.152, A:G.153, A:F.154 Water bridges: A:A.72, A:A.72, A:T.200, A:T.200

4 x CO: COBALT (II) ION(Non-covalent)

CO.2: 1 residues within 4Å: Chain A: D.26 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.26, A:D.26 CO.3: 1 residues within 4Å: Chain A: N.138 No protein-ligand interaction detected (PLIP) CO.4: 1 residues within 4Å: Chain B: M.439 No protein-ligand interaction detected (PLIP) CO.5: 1 residues within 4Å: Chain B: D.26 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:D.26, B:D.26

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.6: 20 residues within 4Å: Chain B: E.64, N.68, A.72, K.75, D.107, G.111, M.112, N.120, S.127, G.128, S.129, G.148, Q.149, F.150, G.151, V.152, G.153, F.154, T.200, R.351 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:N.68, B:K.75, B:D.107, B:S.127, B:S.127, B:G.128, B:S.129, B:S.129, B:Q.149, B:F.150, B:G.151, B:V.152, B:G.153, B:F.154, B:T.200 Water bridges: B:E.64, B:D.71, B:G.111, B:S.129 Salt bridges: B:R.351

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Elnatan, D. et al., Symmetry broken and rebroken during the ATP hydrolysis cycle of the mitochondrial Hsp90 TRAP1. Elife (2017)

Release Date

2018-03-14

Peptides

TNF receptor-associated protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

TNF receptor-associated protein 1

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